Cucsa.383370 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.383370 T49663_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.383370.1 RRM 58 126
Cucsa.383370.1 RRM 163 232

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005979m Prunus persica ppa005979m N 0.777
GRMZM2G167505 Zea mays GRMZM2G167505 N 0.755
AC198361.3_FG004 Zea mays AC198361.3_FG004 N 0.741
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.712
Glyma20g34330.1 Glycine max Glyma20g34330.1 N 0.813
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.719
Glyma10g33320.1 Glycine max Glyma10g33320.1 N 0.799
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.719
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.770
GRMZM2G176918 Zea mays GRMZM2G176918 N 0.741
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.712
MDP0000130865 Malus x domestica MDP0000130865 N 0.755
ppa005309m Prunus persica ppa005309m N 0.899
ppa005122m Prunus persica ppa005122m N 0.705
ppa004834m Prunus persica ppa004834m N 0.705
MDP0000320861 Malus x domestica MDP0000320861 N 0.763
MDP0000286430 Malus x domestica MDP0000286430 N 0.741
MDP0000217366 Malus x domestica MDP0000217366 N 0.885
MDP0000204698 Malus x domestica MDP0000204698 N 0.705
MDP0000173934 Malus x domestica MDP0000173934 N 0.871
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.863
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.705
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.741
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.705
LOC_Os10g33230 Oryza sativa LOC_Os10g33230 N 0.734
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.820
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.842
XM_002870277.1 Arabidopsis lyrata fgenesh2_kg.7__2913__AT4G14300.1 N 0.745
AT4G14300 Arabidopsis thaliana AT4G14300-TAIR-G N 0.738
PK25912.1 Cannabis sativa PK25912.1 N 0.712
B9HKT4_POPTR Populus trichocarpa POPTR_0008s17030 N 0.799
B9HSS5_POPTR Populus trichocarpa POPTR_0010s07790 N 0.791
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.705
cassava12601.valid.m1 Manihot esculenta cassava12601.valid.m1 N 0.763
cassava12600.valid.m1 Manihot esculenta cassava12600.valid.m1 N 0.763
cassava12599.valid.m1 Manihot esculenta cassava12599.valid.m1 N 0.763
cassava12598.valid.m1 Manihot esculenta cassava12598.valid.m1 N 0.763
30008.m000830 Ricinus communis 30008.m000830 N 0.835
27613.m000635 Ricinus communis 27613.m000635 N 0.705
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.763
B9IBE6_POPTR Populus trichocarpa POPTR_0014s18470 N 0.734
PK00513.1 Cannabis sativa PK00513.1 N 0.842