ppa005661m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa005661m T58361_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa005661m RRM 117 186
ppa005661m RRM 210 281
ppa005661m RRM 330 394

Links

Other RRM family RBPs
Other Prunus persica RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000200455 Malus x domestica MDP0000200455 I 0.787
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.744
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.773
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.773
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.821
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.739
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.773
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.821
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.744
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.773
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.744
mgf000380m Mimulus guttatus mgf000380m I 0.749
mgf011075m Mimulus guttatus mgf011075m I 0.749
MDP0000136330 Malus x domestica MDP0000136330 I 0.787
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.768
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.807
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.792
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.754
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.729
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.744
ppa005903m Prunus persica ppa005903m I 0.792
mgf012795m Mimulus guttatus mgf012795m I 0.715
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.774
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.710
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.710
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.812
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.744
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.797
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.802
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.763
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.797
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.797
PK15272.1 Cannabis sativa PK15272.1 I 0.865
PK00840.1 Cannabis sativa PK00840.1 I 0.764
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.739
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.812
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.773
30170.m014217 Ricinus communis 30170.m014217 I 0.763
29801.m003218 Ricinus communis 29801.m003218 I 0.802
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.744
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.768
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.816
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.821
MDP0000262005 Malus x domestica MDP0000262005 N 0.821
MDP0000176892 Malus x domestica MDP0000176892 N 0.740
MDP0000142206 Malus x domestica MDP0000142206 N 0.821
cassava1155.valid.m1 Manihot esculenta cassava1155.valid.m1 N 0.720
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.710
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.729
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.729
mgf013285m Mimulus guttatus mgf013285m N 0.715