CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
BGIOSIBCE004747
(
Oryza indica
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
BGIOSIBCE004747
T01937_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSIBCE004747
CCCH ZF
81
96
SGEPDCTYYLRTGLCR
BGIOSIBCE004747
CCCH ZF
105
131
MGQPECQYYLKTGTCKFGPTCKFHHPR
BGIOSIBCE004747
CCCH ZF
151
177
PSEKECAYYLKTGQCKYGNTCKFHHPE
BGIOSIBCE004747
CCCH ZF
313
339
PDQPECQYYMKTGDCKFGAVCKFHHPR
BGIOSIBCE004747
CCCH ZF
359
385
PGEELCKFYSRYGICKFGANCKFDHPT
Links
Other
CCCH ZF
family RBPs
Other
Oryza indica
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R005385
Ailuropoda melanoleuca
Ame_R005385
I
0.000
ENSBTAG00000026909
Bos taurus
ENSBTAG00000026909
I
0.000
ENSETEG00000014756
Echinops telfairi
ENSETEG00000014756
I
0.000
ENSETEG00000018937
Echinops telfairi
ENSETEG00000018937
I
0.000
ENSPPYG00000013265
Pongo pygmaeus
ENSPPYG00000013265
I
0.000
ENSRNOG00000008664
Rattus norvegicus
ENSRNOG00000008664
I
0.000
ENSTBEG00000001546
Tupaia belangeri
ENSTBEG00000001546
I
0.000
LOC100395223
Callithrix jacchus
ENSCJAG00000013538
I
0.000
Ncl
Rattus norvegicus
ENSRNOG00000018273
I
0.000
NCL
Tarsius syrichta
ENSTSYG00000004355
I
0.000
NCL
Pteropus vampyrus
ENSPVAG00000000297
I
0.000
NCL
Pan troglodytes
ENSPTRG00000013025
I
0.000
NCL
Tursiops truncatus
ENSTTRG00000009094
I
0.000
NCL
Oryctolagus cuniculus
ENSOCUG00000004312
I
0.000
Ncl
Mus musculus
ENSMUSG00000026234
I
0.000
NCL
Macaca mulatta
ENSMMUG00000018094
I
0.000
NCL
Canis familiaris
ENSCAFG00000011037
I
0.000
NCL
Cavia porcellus
ENSCPOG00000001034
I
0.000
Ncl
Dipodomys ordii
ENSDORG00000012513
I
0.000
NCL
Bos taurus
ENSBTAG00000016174
I
0.000
NCL
Erinaceus europaeus
ENSEEUG00000005913
I
0.000
NCL
Homo sapiens
ENSG00000115053
D
0.000
NCL
Gorilla gorilla
ENSGGOG00000004300
I
0.000
NCL
Microcebus murinus
ENSMICG00000002538
I
0.000
Q6X9Z0_HORSE
Equus caballus
ENSECAG00000021868
I
0.000