BGIOSIBCE004747 (Oryza indica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 BGIOSIBCE004747 T01937_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE004747 CCCH ZF 81 96
BGIOSIBCE004747 CCCH ZF 105 131
BGIOSIBCE004747 CCCH ZF 151 177
BGIOSIBCE004747 CCCH ZF 313 339
BGIOSIBCE004747 CCCH ZF 359 385

Links

Other CCCH ZF family RBPs
Other Oryza indica RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.911
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.888
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.888
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.881
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.858
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.799
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.791
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.791
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.784
ppa005813m Prunus persica ppa005813m N 0.776
SB05G013190 Sorghum bicolor Sb05g013190 N 0.776
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.776
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.769
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.769
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.769
PK23881.1 Cannabis sativa PK23881.1 N 0.769
30128.m009030 Ricinus communis 30128.m009030 N 0.769
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.769
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.769
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.761
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.756
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.756
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.754
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.754
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.739
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.731
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.731
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.731
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.724
mgf007299m Mimulus guttatus mgf007299m N 0.719
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.716