CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
fubp1
(
Xenopus tropicalis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSXETG00000013137
T19764_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHSRP
M342_0.6
Homo sapiens
Sequence logo not available
CnsCyUCC
RIP-chip
Cook et al.(2011)
906_17437629.3
0.755
KHSRP
M341_0.6
Homo sapiens
Sequence logo not available
nUGUrUrU
RIP-chip
Cook et al.(2011)
906_17437629.2
0.755
KHSRP
M340_0.6
Homo sapiens
Sequence logo not available
UwUAUUUw
RIP-chip
Cook et al.(2011)
906_17437629.1
0.755
KHSRP
M339_0.6
Homo sapiens
Sequence logo not available
UAUUUAUw
RIP-chip
Cook et al.(2011)
906_17437629
0.755
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000028784
KH
90
152
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPDRSCMLTGSPDSVQAAKRLL
ENSXETP00000028784
KH
175
239
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRIAGDPYKVQQAKEMV
ENSXETP00000028784
KH
265
327
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGSTPERIAQITGPQDRCQHAAEII
ENSXETP00000028784
KH
366
431
EFNFVVPTVKTGLIIGKGGETIKNISQQSGARIELQRNPPPNADPNVKLFTIRGSPQQIDYARQLV
ENSXETP00000047315
KH
90
152
TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGMPDRSCMLTGSPDSVQAAKRLL
ENSXETP00000047315
KH
175
239
VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRIAGDPYKVQQAKEMV
ENSXETP00000047315
KH
265
327
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGSTPERIAQITGPQDRCQHAAEII
ENSXETP00000047315
KH
366
431
EFNFVVPTVKTGLIIGKGGETIKNISQQSGARIELQRNPPPNADPNVKLFTIRGSPQQIDYARQLV
Links
Other
KH
family RBPs
Other
Xenopus tropicalis
RBPs
109 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R007421
Ailuropoda melanoleuca
Ame_R007421
I
0.000
B7NZE2_RABIT
Oryctolagus cuniculus
ENSOCUG00000003551
I
0.000
CELF3
Sus scrofa
ENSSSCG00000006618
I
0.000
CELF3
Pan troglodytes
ENSPTRG00000001293
I
0.000
CELF3
Ochotona princeps
ENSOPRG00000011130
I
0.000
Celf3
Mus musculus
ENSMUSG00000028137
I
0.000
CELF3
Monodelphis domestica
ENSMODG00000018897
I
0.000
CELF3
Loxodonta africana
ENSLAFG00000030147
I
0.000
CELF3
Gasterosteus aculeatus
ENSGACG00000011707
I
0.000
CELF3
Homo sapiens
ENSG00000159409
I
0.000
CELF3
Equus caballus
ENSECAG00000020365
I
0.000
CELF3
Cavia porcellus
ENSCPOG00000003539
I
0.000
CELF3
Canis familiaris
ENSCAFG00000012794
I
0.000
CELF3
Callithrix jacchus
ENSCJAG00000007857
I
0.000
CELF3_BOVIN
Bos taurus
ENSBTAG00000019131
I
0.000
D4A916_RAT
Rattus norvegicus
ENSRNOG00000020875
I
0.000
ENSGGOG00000021973
Gorilla gorilla
ENSGGOG00000021973
I
0.000
ENSPPYG00000000859
Pongo pygmaeus
ENSPPYG00000000859
N
0.000