fubp1 (Xenopus tropicalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSXETG00000013137 T19764_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.755
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.755
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.755
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.755
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000028784 KH 90 152
ENSXETP00000028784 KH 175 239
ENSXETP00000028784 KH 265 327
ENSXETP00000028784 KH 366 431
ENSXETP00000047315 KH 90 152
ENSXETP00000047315 KH 175 239
ENSXETP00000047315 KH 265 327
ENSXETP00000047315 KH 366 431

Links

Other KH family RBPs
Other Xenopus tropicalis RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.000
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.000
CELF3 Sus scrofa ENSSSCG00000006618 I 0.000
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.000
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.000
Celf3 Mus musculus ENSMUSG00000028137 I 0.000
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.000
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.000
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.000
CELF3 Homo sapiens ENSG00000159409 I 0.000
CELF3 Equus caballus ENSECAG00000020365 I 0.000
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.000
CELF3 Canis familiaris ENSCAFG00000012794 I 0.000
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.000
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.000
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.000
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.000
ENSPPYG00000000859 Pongo pygmaeus ENSPPYG00000000859 N 0.000