fubp1 (Xenopus tropicalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSXETG00000013137 T19764_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.755
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.755
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.755
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.755
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000028784 KH 90 152
ENSXETP00000028784 KH 175 239
ENSXETP00000028784 KH 265 327
ENSXETP00000028784 KH 366 431
ENSXETP00000047315 KH 90 152
ENSXETP00000047315 KH 175 239
ENSXETP00000047315 KH 265 327
ENSXETP00000047315 KH 366 431

Links

Other KH family RBPs
Other Xenopus tropicalis RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.767
AAH44277 Xenopus laevis AAH44277 I 0.977
AAH60400 Xenopus laevis AAH60400 N 0.775
AAH70981 Xenopus laevis AAH70981 I 0.981
AAI61696 Xenopus laevis AAI61696 I 0.743
AAI69815 Xenopus laevis AAI69815 I 0.981
AAI69923 Xenopus laevis AAI69923 I 0.735
AAN77160 Xenopus laevis AAN77160 I 0.735
AAN77161 Xenopus laevis AAN77161 I 0.953
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.771
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.938
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.755
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.756
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.884
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.875
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.946
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.755
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.771
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.942
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.942
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.875
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.930
FUBP1 Microcebus murinus ENSMICG00000014463 N 0.798
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.942
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.942
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.946
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.841
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.942
Fubp1 Mus musculus ENSMUSG00000028034 I 0.938
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.942
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.884
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.942
FUBP1 Pteropus vampyrus ENSPVAG00000014637 N 0.778
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.946
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.916
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.934
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.942
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.946
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.942
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.942
FUBP1 Homo sapiens ENSG00000162613 I 0.946
fubp1 Danio rerio ENSDARG00000029248 I 0.883
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.942
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.942
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.942
FUBP1 Equus caballus ENSECAG00000010867 I 0.942
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.938
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.934
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.942
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.767
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.767
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.767
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.752
FUBP3 Oryzias latipes ENSORLG00000007103 N 0.717
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.767
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.748
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.775
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.744
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.775
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.771
FUBP3 Felis catus ENSFCAG00000005113 N 0.764
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.744
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.771
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.767
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.775
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.733
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.771
FUBP3 Gasterosteus aculeatus ENSGACG00000016704 N 0.729
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.775
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.771
FUBP3 Tetraodon nigroviridis ENSTNIG00000009019 N 0.717
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.760
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.748
Fubp3 Mus musculus ENSMUSG00000026843 N 0.764
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.775
FUBP3 Homo sapiens ENSG00000107164 N 0.771
FUBP3 Takifugu rubripes ENSTRUG00000018658 N 0.721
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.755
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.755
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.755
KHSRP Sus scrofa ENSSSCG00000013538 I 0.755
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.755
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.704
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.728
KHSRP Homo sapiens ENSG00000088247 D 0.755
KHSRP Felis catus ENSFCAG00000003731 I 0.755
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.751
KHSRP Danio rerio ENSDARG00000026489 I 0.724
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.755
KHSRP Canis familiaris ENSCAFG00000018667 I 0.755
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.755
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.755
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.755
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.712
KHSRP Oryzias latipes ENSORLG00000011882 I 0.704
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.751
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.759
Khsrp Mus musculus ENSMUSG00000007670 I 0.755
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.700
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.755
KHSRP Microcebus murinus ENSMICG00000007863 I 0.739
LOC100065608 Equus caballus ENSECAG00000018305 I 0.755
LOC100069755 Equus caballus ENSECAG00000011500 N 0.736
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.775
LOC505564 Bos taurus ENSBTAG00000021018 I 0.755
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.942
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.931
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.771