CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP004592
(
Anopheles gambiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AGAP004592
T32501_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.961
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.961
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP004592-PA
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
AGAP004592-PA
RRM
114
179
LVVENLSTRVSWQDLKDYMRQAGEVTYADAHKQRKNEGVVEFATLSDMKTAIEKLDDTELNGRRIR
AGAP004592-PB
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
AGAP004592-PC
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
AGAP004592-PD
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
AGAP004592-PE
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
AGAP004592-PE
RRM
120
185
LVVENLSTRVSWQDLKDYMRQAGEVTYADAHKQRKNEGVVEFATLSDMKTAIEKLDDTELNGRRIR
AGAP004592-PF
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
AGAP004592-PG
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
AGAP004592-PH
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
AGAP004592-PH
RRM
114
179
LVVENLSTRVSWQDLKDYMRQAGEVTYADAHKQRKNEGVVEFATLSDMKTAIEKLDDTELNGRRIR
AGAP004592-PI
RRM
1
48
MRQAGEVTYADAHKQRKNEGVVEFATLSDMKTAIEKLDDTELNGRRIR
Links
Other
RRM
family RBPs
Other
Anopheles gambiae
RBPs
135 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pm.chr_5_#_12
Ostreococcus RCC809
fgenesh1_pm.chr_5_#_12
N
0.000