ENSBTAG00000012793 (Bos taurus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSBTAG00000012793 T34854_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.965
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.867
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.790
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.762
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000051349 RRM 6 76
ENSBTAP00000051349 RRM 93 164

Links

Other RRM family RBPs
Other Bos taurus RBPs

126 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001303 Ricinus communis 30183.m001303 I 0.790
99199 Helobdella robusta 99199 I 0.825
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.979
AAEL013795 Aedes aegypti AAEL013795 I 0.874
AAH45264 Xenopus laevis AAH45264 I 0.972
AAH77458 Xenopus laevis AAH77458 I 0.972
AGAP001538 Anopheles gambiae AGAP001538 I 0.860
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.741
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.741
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.867
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.979
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.811
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.811
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.776
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.762
Bm1_43460 Brugia malayi Bm1_43460 I 0.769
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.762
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.713
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.776
CBG13349 Caenorhabditis briggsae CBG13349 I 0.776
CBN06124 Caenorhabditis brenneri CBN06124 I 0.790
CJA19238 Caenorhabditis japonica CJA19238 I 0.776
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.874
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.874
CRE01639 Caenorhabditis remanei CRE01639 I 0.790
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.783
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.839
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.748
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.979
ENSBTAG00000026365 Bos taurus ENSBTAG00000026365 I 0.792
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.909
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.979
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.979
ENSDORG00000016366 Dipodomys ordii ENSDORG00000016366 I 0.706
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.979
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.979
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.916
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.979
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.979
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.979
ENSOANG00000004768 Ornithorhynchus anatinus ENSOANG00000004768 I 0.703
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.979
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.979
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.972
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.979
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.979
ENSSTOG00000000684 Spermophilus tridecemlineatus ENSSTOG00000000684 I 0.713
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.945
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.979
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.979
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.748
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.944
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.762
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.853
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.762
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.895
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.713
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.867
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.762
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.881
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.839
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.720
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.748
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.944
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.860
GE16738 Drosophila yakuba FBgn0234234 I 0.860
GF20385 Drosophila ananassae FBgn0097392 I 0.860
GG19577 Drosophila erecta FBgn0111779 I 0.860
GH17589 Drosophila grimshawi FBgn0125059 I 0.867
GI16317 Drosophila mojavensis FBgn0139065 I 0.867
GJ15655 Drosophila virilis FBgn0202845 I 0.867
GK19717 Drosophila willistoni FBgn0221715 I 0.860
GL21313 Drosophila persimilis FBgn0158906 I 0.860
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.783
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.769
GM12470 Drosophila sechellia FBgn0167407 I 0.853
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.755
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.762
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.769
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.734
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.713
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.734
ISCW010601 Ixodes scapularis ISCW010601 I 0.902
LOAG_01189 Loa loa LOAG_01189 I 0.776
LOC100054350 Equus caballus ENSECAG00000024737 I 0.979
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.762
MDP0000131129 Malus x domestica MDP0000131129 I 0.783
MDP0000320945 Malus x domestica MDP0000320945 I 0.783
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.783
Minc01580 Meloidogyne incognita Minc01580 I 0.748
Minc02568 Meloidogyne incognita Minc02568 I 0.748
Minc12926 Meloidogyne incognita Minc12926 I 0.748
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.881
PHUM263440 Pediculus humanus PHUM263440 I 0.867
PK08238.1 Cannabis sativa PK08238.1 I 0.790
ppa007508m Prunus persica ppa007508m I 0.769
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.804
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.979
sap-49 Caenorhabditis elegans C08B11.5 D 0.790
SB01G020190 Sorghum bicolor Sb01g020190 I 0.762
SF3B4 Homo sapiens ENSG00000143368 I 0.979
sf3b4 Danio rerio ENSDARG00000018574 D 0.979
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.979
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.979
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.979
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.979
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.979
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.979
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.979
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.979
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.979
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.979
SF3B4 Gallus gallus ENSGALG00000013352 I 0.979
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.979
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.979
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.979
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.979
Smp_067420 Schistosoma mansoni Smp_067420 D 0.867
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.846
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.783
Spx Drosophila melanogaster FBgn0015818 I 0.853
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.776
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.741
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.874
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.839
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.874