ENSCING00000006773 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000006773 T35409_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.789
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.775
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000013902 RRM 242 312
ENSCINP00000013911 RRM 164 234
ENSCINP00000013923 RRM 234 304

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

239 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
83285 Helobdella robusta 83285 N 0.775
A2VDB3 Xenopus laevis A2VDB3 I 0.761
A6QP53_BOVIN Bos taurus ENSBTAG00000016980 N 0.803
AAEL005541 Aedes aegypti AAEL005541 N 0.761
AAEL005690 Aedes aegypti AAEL005690 N 0.761
AAEL010642 Aedes aegypti AAEL010642 I 0.732
AAI29577 Xenopus laevis AAI29577 I 0.746
AAI29698 Xenopus laevis AAI29698 I 0.761
AB03196.1 Alternaria brassicicola AB03196.1 N 0.732
ACLA_065360 Aspergillus clavatus CADACLAG00006149 N 0.732
AFLA_071340 Aspergillus flavus CADAFLAG00008558 N 0.746
AFUA_7G02170 Aspergillus fumigatus CADAFUAG00001177 N 0.732
AGAP008136 Anopheles gambiae AGAP008136 N 0.775
AGAP010200 Anopheles gambiae AGAP010200 I 0.718
amel4_ncbi_hmm11961 Apis mellifera amel4_ncbi_hmm11961 N 0.775
amel4_ncbi_hmm35613 Apis mellifera amel4_ncbi_hmm35613 N 0.775
Ame_R008665 Ailuropoda melanoleuca Ame_R008665 N 0.803
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.789
An12g00490 Aspergillus niger CADANGAG00009498 N 0.732
ANIA_09095 Aspergillus nidulans CADANIAG00009519 N 0.746
AO090038000594 Aspergillus oryzae CADAORAG00009343 N 0.746
Aqu1.218430 Amphimedon queenslandica Aqu1.218430 I 0.704
Aqu1.223583 Amphimedon queenslandica Aqu1.223583 N 0.817
ARB_04672 Arthroderma benhamiae ARB_04672 N 0.746
ATEG_01850 Aspergillus terreus CADATEAG00001841 N 0.718
BC1G_10007 Botrytis cinerea BC1G_10007 N 0.746
BDBG_04009 Blastomyces dermatitidis BDBG_04009 N 0.732
BGIBMGA005213 Bombyx mori BGIBMGA005213 I 0.718
BGIBMGA008977 Bombyx mori BGIBMGA008977 N 0.789
Bm1_40380 Brugia malayi Bm1_40380 I 0.732
BRADI2G41160 Brachypodium distachyon BRADI2G41160 N 0.718
CAOG_07850 Capsaspora owczarzaki CAOG_07850 N 0.718
CBG12494 Caenorhabditis briggsae CBG12494 N 0.775
CBG21313 Caenorhabditis briggsae CBG21313 I 0.704
CBN08292 Caenorhabditis brenneri CBN08292 N 0.761
CBN12017 Caenorhabditis brenneri CBN12017 I 0.704
CG5808 Drosophila melanogaster FBgn0027617 N 0.789
cgd8_2350 Cryptosporidium parvum cgd8_2350 N 0.718
CHGG_06839 Chaetomium globosum CHGG_06839 N 0.789
Chro.80276 Cryptosporidium hominis Chro.80276 N 0.718
CIMG_07762 Coccidioides immitis CIMG_07762 N 0.732
CJA06296 Caenorhabditis japonica CJA06296 N 0.775
CJA09414 Caenorhabditis japonica CJA09414 I 0.718
CNBG_1409 Cryptococcus neoformans CNBG_1409 N 0.704
CPIJ000912 Culex quinquefasciatus CPIJ000912 N 0.761
CpipJ_CPIJ000912 Culex pipiens CpipJ_CPIJ000912 N 0.761
CPSG_09333 Coccidioides posadasii CPSG_09333 N 0.732
CRE29329 Caenorhabditis remanei CRE29329 I 0.704
CRE29496 Caenorhabditis remanei CRE29496 N 0.761
cyp6 Schizosaccharomyces pombe SPBC17G9.05 N 0.746
DGIL_AUG5s502g5t1 Acyrtosiphon pisum DGIL_AUG5s502g5t1 N 0.746
EAT81165.2 Phaeosphaeria nodorum EAT81165.2 N 0.746
EDO07903.1 Babesia bovis EDO07903.1 N 0.732
ENSCSAVG00000010619 Ciona savignyi ENSCSAVG00000010619 N 0.930
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.732
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.789
ENSOANG00000001063 Ornithorhynchus anatinus ENSOANG00000001063 N 0.817
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.789
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.775
estExt_fgenesh1_kg.C_170006 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_170006 N 0.732
estExt_fgenesh1_kg.C_40083 Melampsora laricis populina estExt_fgenesh1_kg.C_40083 N 0.732
estExt_fgenesh2_kg.C_140159 Agaricus bisporus estExt_fgenesh2_kg.C_140159 N 0.746
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.775
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.775
estExt_fgenesh2_pm.C_1170007 Branchiostoma floridae estExt_fgenesh2_pm.C_1170007 N 0.789
estExt_fgenesh3_pg.C_910016 Postia placenta estExt_fgenesh3_pg.C_910016 N 0.718
estExt_fgenesh3_pm.C_240021 Chlorella NC64A estExt_fgenesh3_pm.C_240021 N 0.732
estExt_fgeneshCV_pg.C_40316 Chlorella vulgaris estExt_fgeneshCV_pg.C_40316 N 0.732
estExt_Genewise1.C_180101 Capitella teleta estExt_Genewise1.C_180101 N 0.761
estExt_Genewise1.C_23809 Thielavia terrestris estExt_Genewise1.C_23809 N 0.746
estExt_Genewise1.C_30053 Myceliophthora thermophila estExt_Genewise1.C_30053 N 0.789
estExt_Genewise1.C_30147 Volvox carteri estExt_Genewise1.C_30147 N 0.704
estExt_Genewise1Plus.C_11662 Tremella mesenterica estExt_Genewise1Plus.C_11662 N 0.718
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.718
estExt_Genewise1Plus.C_12820 Neurospora discreta estExt_Genewise1Plus.C_12820 N 0.803
estExt_Genewise1Plus.C_40228 Batrachochytrium dendrobatidis estExt_Genewise1Plus.C_40228 N 0.761
estExt_Genewise1Plus.C_40585 Mucor circinelloides estExt_Genewise1Plus.C_40585 N 0.761
estExt_Genewise1Plus.C_61472 Cryphonectria parasitica estExt_Genewise1Plus.C_61472 N 0.775
estExt_Genewise1Plus.C_chr_40303 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_40303 N 0.746
estExt_GeneWisePlus.C_270056 Trichoderma reesei estExt_GeneWisePlus.C_270056 N 0.746
EuGene.1200010297 Ostreococcus RCC809 EuGene.1200010297 N 0.746
e_gw.42.57.1 Nematostella vectensis e_gw.42.57.1 N 0.831
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.718
e_gw1.11.236.1 Trichoderma atroviride e_gw1.11.236.1 N 0.746
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.732
e_gw1.20.215.1 Phycomyces blakesleeanus e_gw1.20.215.1 N 0.732
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.761
e_gw1.4.2113.1 Pleurotus ostreatus e_gw1.4.2113.1 N 0.746
e_gw1.4.370.1 Sporobolomyces roseus e_gw1.4.370.1 N 0.775
e_gw1.4.423.1 Coccomyxa C 169 e_gw1.4.423.1 N 0.732
e_gw1.6.1078.1 Selaginella moellendorfii e_gw1.6.1078.1 N 0.746
e_gw1.6.80.1 Monosiga brevicollis e_gw1.6.80.1 N 0.789
e_gww1.4.788.1 Laccaria bicolor e_gww1.4.788.1 N 0.746
e_gww2.22.65.1 Phanerochaete chrysosporium e_gww2.22.65.1 N 0.718
fgenesh1_pm.00868_#_101 Aspergillus carbonarius fgenesh1_pm.00868_#_101 N 0.732
fgenesh1_pm.C_scaffold_1000049 Schizophyllum commune fgenesh1_pm.C_scaffold_1000049 N 0.732
fgenesh1_pm.C_scaffold_3000471 Trichoderma virens fgenesh1_pm.C_scaffold_3000471 N 0.746
fgenesh1_pm.C_scaffold_9000117 Mycosphaerella fijiensis fgenesh1_pm.C_scaffold_9000117 N 0.732
fgenesh1_pm.sca_11_chr8_3_0000173 Nectria haematococca fgenesh1_pm.sca_11_chr8_3_0000173 N 0.746
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA Heterobasidion annosum fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA N 0.718
fgeneshTA2_pg.C_scaffold_8000290 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000290 N 0.803
FGSG_04479 Fusarium graminearum FGSG_04479 N 0.746
FOXG_13736 Fusarium oxysporum FOXG_13736 N 0.761
FVEG_11166 Fusarium verticillioides FVEG_11166 N 0.761
GA26948-RA Drosophila pseudoobscura FBgn0248319 N 0.803
GD18267 Drosophila simulans FBgn0189800 N 0.789
GE10772 Drosophila yakuba FBgn0228614 N 0.789
GF18772 Drosophila ananassae FBgn0095789 N 0.803
GG12319 Drosophila erecta FBgn0104609 N 0.789
GH18460 Drosophila grimshawi FBgn0125927 N 0.803
GI24038 Drosophila mojavensis FBgn0146761 N 0.803
GJ23668 Drosophila virilis FBgn0210765 N 0.803
GK13166 Drosophila willistoni FBgn0215175 N 0.761
GL13859 Drosophila persimilis FBgn0151464 N 0.803
GLRG_06614 Colletotrichum graminicola GLRG_06614 N 0.732
GM23461 Drosophila sechellia FBgn0178328 N 0.789
GSTUMT00009813001 Tuber melanosporum GSTUMT00009813001 N 0.732
gw1.1.256.1 Neurospora tetrasperma gw1.1.256.1 N 0.803
gw1.1.892.1 Trichoplax adhaerens gw1.1.892.1 N 0.718
gw1.12.00.150.1 Ostreococcus tauri gw1.12.00.150.1 N 0.746
gw1.13.70.1 Lottia gigantea gw1.13.70.1 N 0.761
gwEuk.12.143.1 Ostreococcus lucimarinus gwEuk.12.143.1 N 0.761
HCAG_04417 Histoplasma capsulatum HCAG_04417 N 0.732
LOAG_04208 Loa loa LOAG_04208 I 0.732
LOAG_08216 Loa loa LOAG_08216 N 0.831
LOC100051102 Equus caballus ENSECAG00000018215 I 0.789
MCYG_06073 Microsporum canis MCYG_06073 N 0.746
MGG_10681 Magnaporthe oryzae MGG_10681 N 0.761
MGYG_05886 Microsporum gypseum MGYG_05886 N 0.746
Minc10084 Meloidogyne incognita Minc10084 N 0.789
Minc13155 Meloidogyne incognita Minc13155 I 0.718
nasonia_NCBI_hmm783174 Nasonia vitripennis nasonia_NCBI_hmm783174 N 0.746
NCU10166 Neurospora crassa NCU10166 N 0.803
NFIA_114890 Neosartorya fischeri CADNFIAG00010434 N 0.732
PABG_01156 Paracoccidioides brasiliensis PABG_01156 N 0.732
Pa_2_13850 Podospora anserina Pa_2_13850 N 0.803
Pc21g11960 Penicillium chrysogenum Pc21g11960 N 0.746
PGTG_10482 Puccinia graminis PGTG_10482 N 0.732
PGTG_14680 Puccinia graminis PGTG_14680 N 0.718
PHUM268300 Pediculus humanus PHUM268300 N 0.761
PierreAnnot2.00074 Micromonas pusilla PierreAnnot2.00074 N 0.732
PMAA_010740 Penicillium marneffei PMAA_010740 N 0.746
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.718
PPIL4 Monodelphis domestica ENSMODG00000016825 N 0.803
Ppil4 Mus musculus ENSMUSG00000015757 N 0.803
PPIL4 Oryzias latipes ENSORLG00000015310 N 0.831
PPIL4 Homo sapiens ENSG00000131013 N 0.803
PPIL4 Oryctolagus cuniculus ENSOCUG00000007696 N 0.803
PPIL4 Cavia porcellus ENSCPOG00000014614 N 0.803
ppil4 Danio rerio ENSDARG00000043854 N 0.817
PPIL4 Equus caballus ENSECAG00000021819 N 0.803
PPIL4 Gallus gallus ENSGALG00000012364 N 0.817
PPIL4 Gorilla gorilla ENSGGOG00000009686 N 0.803
PPIL4 Loxodonta africana ENSLAFG00000026804 N 0.803
PPIL4 Meleagris gallopavo ENSMGAG00000012596 N 0.817
PPIL4 Callithrix jacchus ENSCJAG00000019613 N 0.778
PPIL4 Myotis lucifugus ENSMLUG00000002766 N 0.803
PPIL4 Erinaceus europaeus ENSEEUG00000000959 N 0.789
PPIL4 Anolis carolinensis ENSACAG00000006936 N 0.803
PPIL4 Macaca mulatta ENSMMUG00000023067 N 0.803
PPIL4 Microcebus murinus ENSMICG00000006287 N 0.803
PPIL4 Otolemur garnettii ENSOGAG00000014153 N 0.803
PPIL4 Pteropus vampyrus ENSPVAG00000000746 N 0.803
Ppil4 Rattus norvegicus ENSRNOG00000015552 N 0.803
ppil4 Xenopus tropicalis ENSXETG00000021385 N 0.831
PPIL4 Vicugna pacos ENSVPAG00000005157 N 0.803
PPIL4 Tursiops truncatus ENSTTRG00000006014 N 0.803
PPIL4 Sorex araneus ENSSARG00000011244 N 0.803
PPIL4 Tetraodon nigroviridis ENSTNIG00000002706 N 0.845
PPIL4 Taeniopygia guttata ENSTGUG00000010655 N 0.803
PPIL4 Pan troglodytes ENSPTRG00000018692 N 0.803
PPIL4 Spermophilus tridecemlineatus ENSSTOG00000013980 N 0.789
PPIL4 Procavia capensis ENSPCAG00000008203 N 0.803
PPIL4 Takifugu rubripes ENSTRUG00000006670 N 0.831
PPIL4 Gasterosteus aculeatus ENSGACG00000006639 N 0.831
PPIL4 Ochotona princeps ENSOPRG00000005619 N 0.803
PredSwiss_ASS2010_933.2 Pneumocystis carinii PredSwiss_ASS2010_933.2 N 0.746
PredSwiss_CON599.3 Pneumocystis carinii PredSwiss_CON599.3 N 0.746
PTRG_04608 Pyrenophora tritici repentis PTRG_04608 N 0.746
PTSG_07932 Salpingoeca rosetta PTSG_07932 N 0.761
PTTG_06854 Puccinia triticina PTTG_06854 N 0.704
Q6JDI1_CANFA Canis familiaris ENSCAFG00000000379 N 0.803
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.789
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.789
RBM42 Canis familiaris ENSCAFG00000006925 I 0.789
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.775
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.789
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.789
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.789
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.789
RBM42 Sorex araneus ENSSARG00000010724 I 0.789
Rbm42 Mus musculus ENSMUSG00000036733 I 0.789
RBM42 Sus scrofa ENSSSCG00000002905 I 0.789
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.789
RBM42 Oryzias latipes ENSORLG00000003387 I 0.775
RBM42 Procavia capensis ENSPCAG00000013053 I 0.789
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.789
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.789
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.775
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.789
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.789
rbm42 Danio rerio ENSDARG00000039910 I 0.761
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.789
RBM42 Homo sapiens ENSG00000126254 D 0.789
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.775
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.789
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.789
RBM42 Microcebus murinus ENSMICG00000009880 I 0.789
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.789
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.789
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.789
RO3G_06974 Rhizopus oryzae RO3G_06974 N 0.761
sig-7 Caenorhabditis elegans F39H2.2 N 0.761
SJAG_00470 Schizosaccharomyces japonicus SJAG_00470 N 0.732
Sjc_0091550 Schistosoma japonicum Sjc_0091550 N 0.746
Smp_165540 Schistosoma mansoni Smp_165540 N 0.732
SNAPOd2T00004354001 Oikopleura dioica SNAPOd2T00004354001 N 0.761
SNAPOd2T00026674001 Oikopleura dioica SNAPOd2T00026674001 N 0.740
SNOG_11457 Stagonospora nodorum SNOG_11457 N 0.746
SOCG_02586 Schizosaccharomyces octosporus SOCG_02586 N 0.732
SPOG_01415 Schizosaccharomyces cryophilus SPOG_01415 N 0.732
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.704
SPPG_03169 Spizellomyces punctatus SPPG_03169 N 0.761
tag-262 Caenorhabditis elegans Y54H5A.3 I 0.704
TEQG_07016 Trichophyton equinum TEQG_07016 N 0.746
TERG_06028 Trichophyton rubrum TERG_06028 N 0.746
TP03_0334 Theileria parva TP03_0334 N 0.704
TRV_03115 Trichophyton verrucosum TRV_03115 N 0.746
UM03490 Ustilago maydis UM03490 N 0.704
UREG_02113 Uncinocarpus reesii UREG_02113 N 0.732
VDAG_02606 Verticillium dahliae VDAG_02606 N 0.746
VDBG_02138 Verticillium albo atrum VDBG_02138 N 0.746
WUBG_04730 Wuchereria bancrofti WUBG_04730 N 0.789
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.732
XP_001180629.1 Strongylocentrotus purpuratus XP_001180629.1 N 0.746
XP_001192414.1 Strongylocentrotus purpuratus XP_001192414.1 N 0.746
XP_782627.2 Strongylocentrotus purpuratus XP_782627.2 N 0.746
XP_787384.2 Strongylocentrotus purpuratus XP_787384.2 N 0.746