SRSF5 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000016411 T42149_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.705
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000019508 RRM 6 68
ENSTNIP00000019508 RRM 114 179

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

115 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
62194 Helobdella robusta 62194 I 0.705
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.922
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.922
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.752
AAH44085 Xenopus laevis AAH44085 I 0.783
AAH71160 Xenopus laevis AAH71160 I 0.806
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.922
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.752
Aqu1.218342 Amphimedon queenslandica Aqu1.218342 N 0.721
B52 Drosophila melanogaster FBgn0004587 D 0.705
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.705
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.798
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.705
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.721
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.814
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.744
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.752
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.922
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.721
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.729
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.775
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.705
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.713
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.736
GF17608 Drosophila ananassae FBgn0094626 I 0.705
GK13948 Drosophila willistoni FBgn0215954 I 0.705
LOC100053264 Equus caballus ENSECAG00000026873 I 0.922
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.752
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.783
PHUM290500 Pediculus humanus PHUM290500 I 0.705
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.744
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.915
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.752
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.930
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.922
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.721
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.721
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.729
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.752
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.752
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.744
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.744
Srsf4 Mus musculus ENSMUSG00000028911 I 0.752
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.752
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.744
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.752
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.752
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.752
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.744
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.752
SRSF4 Homo sapiens ENSG00000116350 I 0.752
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.752
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.752
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.752
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.752
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.752
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.752
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.729
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.752
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.721
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.752
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.744
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.922
SRSF5 Sorex araneus ENSSARG00000001059 I 0.806
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.922
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.922
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.922
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 1.000
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.891
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.922
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.922
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.922
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.946
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.930
Srsf5 Mus musculus ENSMUSG00000021134 I 0.922
SRSF5 Gasterosteus aculeatus ENSGACG00000007834 I 0.837
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.930
SRSF5 Homo sapiens ENSG00000100650 D 0.922
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.922
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.915
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.899
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.922
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.922
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.915
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.922
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.806
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.829
Srsf5 Dipodomys ordii ENSDORG00000003989 I 0.744
SRSF5 Felis catus ENSFCAG00000008848 I 0.922
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.922
SRSF5 Pteropus vampyrus ENSPVAG00000009828 I 0.798
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.922
srsf5a Danio rerio ENSDARG00000029818 I 0.791
srsf5b Danio rerio ENSDARG00000027734 I 0.953
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.721
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.705
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.713
SRSF6 Homo sapiens ENSG00000124193 I 0.721
SRSF6 Echinops telfairi ENSETEG00000006221 I 0.705
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.729
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.721
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.713
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.721
Srsf6 Mus musculus ENSMUSG00000016921 I 0.721
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.713
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.721
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.713
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.713
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.713
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.721
srsf6a Danio rerio ENSDARG00000013729 I 0.713
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.806
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.744
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.760
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.744