XM_002891485.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_104684.1 T46100_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_104684.1 RRM 41 111
scaffold_104684.1 RRM 129 198
scaffold_104684.1 RRM 220 289
scaffold_104684.1 RRM 323 392

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
20359_YOR145C Saccharomyces mikatae 20359_YOR145C N 0.000
20872_YOR145C Saccharomyces paradoxus 20872_YOR145C N 0.000
23888_YOR145C Saccharomyces bayanus 23888_YOR145C N 0.000
28525.m000262 Ricinus communis 28525.m000262 N 0.000
3712.m00082 Tetrahymena thermophila 3712.m00082 N 0.000
A7THL8_VANPO Vanderwaltozyma polyspora A7THL8_VANPO N 0.000
AAH42279 Xenopus laevis AAH42279 N 0.000
AAQ24169 Xenopus laevis AAQ24169 N 0.000
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.000
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.000
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.000
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.000
ARB_00984 Arthroderma benhamiae ARB_00984 N 0.000
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.000
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.000
BC1G_12211 Botrytis cinerea BC1G_12211 N 0.000
BDBG_01721 Blastomyces dermatitidis BDBG_01721 N 0.000
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.000
Bm1_42995 Brugia malayi Bm1_42995 N 0.000
CAGL0K09460g Candida glabrata CAGL0K09460g N 0.000
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.000
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.000
Cd36_35296 Candida dubliniensis Cd36_35296 N 0.000
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.000
CIMG_07268 Coccidioides immitis CIMG_07268 N 0.000
CLUG_01545 Candida lusitaniae CLUG_01545 N 0.000
CNBG_1323 Cryptococcus neoformans CNBG_1323 N 0.000
CPAG_01545 Candida parapsilosis CPAG_01545 N 0.000
CPSG_08784 Coccidioides posadasii CPSG_08784 N 0.000
CTRG_05813 Candida tropicalis CTRG_05813 N 0.000
Cucsa.041830 Cucumis sativus Cucsa.041830 N 0.000
Cucsa.201760 Cucumis sativus Cucsa.201760 N 0.000
DEHA0G05258g Debaryomyces hansenii DEHA0G05258g N 0.000
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.000
EAT88982.1 Phaeosphaeria nodorum EAT88982.1 N 0.000
EFA79428.1 Polysphondylium pallidum EFA79428.1 N 0.000
ENSCJAG00000022611 Callithrix jacchus ENSCJAG00000022611 N 0.000
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.000
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.000
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.000
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.000
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.000
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_00036 N 0.000
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.000
estExt_fgenesh5_pg.C_40050 Trichoderma reesei estExt_fgenesh5_pg.C_40050 N 0.000
estExt_Genewise1.C_10689 Thielavia terrestris estExt_Genewise1.C_10689 N 0.000
estExt_Genewise1.C_260084 Melampsora laricis populina estExt_Genewise1.C_260084 N 0.000
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.000
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.000
estExt_Genewise1Plus.C_10659 Myceliophthora thermophila estExt_Genewise1Plus.C_10659 N 0.000
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.000
estExt_Genewise1Plus.C_430054 Neurospora tetrasperma estExt_Genewise1Plus.C_430054 N 0.000
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.000
estExt_Genewise1Plus.C_91132 Trichoderma virens estExt_Genewise1Plus.C_91132 N 0.000
estExt_Genewise1Plus.C_chr_70397 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_70397 N 0.000
estExt_genewise1_human.C_chr_1.20929 Pichia stipitis estExt_genewise1_human.C_chr_1.20929 N 0.000
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.000
e_gw1.15.315.1 Tremella mesenterica e_gw1.15.315.1 N 0.000
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.000
e_gw1.3.1059.1 Mycosphaerella fijiensis e_gw1.3.1059.1 N 0.000
e_gw1.3.2749.1 Cryphonectria parasitica e_gw1.3.2749.1 N 0.000
e_gw1.3.666.1 Neurospora discreta e_gw1.3.666.1 N 0.000
e_gw1.8.261.1 Sporobolomyces roseus e_gw1.8.261.1 N 0.000
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.000
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.000
fgenesh1_kg.C_scaffold_5000048 Selaginella moellendorfii fgenesh1_kg.C_scaffold_5000048 N 0.000
fgenesh1_pg.C_scaffold_107000027 Daphnia pulex fgenesh1_pg.C_scaffold_107000027 N 0.000
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.000
fgenesh1_pm.C_scaffold_14000035 Trichoderma atroviride fgenesh1_pm.C_scaffold_14000035 N 0.000
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.000
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.000
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.000
fgeneshCV_pg.C_scaffold_11000142 Chlorella vulgaris fgeneshCV_pg.C_scaffold_11000142 N 0.000
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.000
FGSG_01345 Fusarium graminearum FGSG_01345 N 0.000
FOXG_00036 Fusarium oxysporum FOXG_00036 N 0.000
FVEG_01480 Fusarium verticillioides FVEG_01480 N 0.000
GA11169-RA Drosophila pseudoobscura FBgn0071224 N 0.000
GD17488 Drosophila simulans FBgn0189040 N 0.000
GE17874 Drosophila yakuba FBgn0068478 N 0.000
Genemark1.5719_g Coccomyxa C 169 Genemark1.5719_g N 0.000
GF20246 Drosophila ananassae FBgn0097253 N 0.000
GG19285 Drosophila erecta FBgn0111489 N 0.000
GH12628 Drosophila grimshawi FBgn0120107 N 0.000
GJ15820 Drosophila virilis FBgn0203007 N 0.000
GLRG_03940 Colletotrichum graminicola GLRG_03940 N 0.000
GM23025 Drosophila sechellia FBgn0177893 N 0.000
GP3.070330 Batrachochytrium dendrobatidis GP3.070330 N 0.000
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.000
HCAG_04100 Histoplasma capsulatum HCAG_04100 N 0.000
KLLA0C06446g Kluyveromyces lactis KLLA0C06446g N 0.000
KLTH0G02574g Kluyveromyces thermotolerans KLTH0G02574g N 0.000
Kwal_18864 Kluyveromyces waltii Kwal_18864 N 0.000
l(1)G0004 Drosophila melanogaster FBgn0027334 N 0.000
LELG_05249 Lodderomyces elongisporus LELG_05249 N 0.000
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.000
LOAG_05624 Loa loa LOAG_05624 N 0.000
LOC100061904 Equus caballus ENSECAG00000011263 N 0.000
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.000
MCYG_07269 Microsporum canis MCYG_07269 N 0.000
MGG_05136 Magnaporthe oryzae MGG_05136 N 0.000
MGYG_04767 Microsporum gypseum MGYG_04767 N 0.000
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.000
NCU07956 Neurospora crassa NCU07956 N 0.000
orf19.7618 Candida albicans orf19.7618 N 0.000
PABG_01374 Paracoccidioides brasiliensis PABG_01374 N 0.000
Pa_3_1680 Podospora anserina Pa_3_1680 N 0.000
Pc14g01220 Penicillium chrysogenum Pc14g01220 N 0.000
PGUG_02960 Candida guilliermondii PGUG_02960 N 0.000
PHUM356890 Pediculus humanus PHUM356890 N 0.000
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.000
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.000
PNO1 Ashbya gossypii PNO1 N 0.000
PNO1 Canis familiaris ENSCAFG00000003256 N 0.000
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.000
pno1 Danio rerio ENSDARG00000008502 N 0.000
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.000
PNO1 Sus scrofa ENSSSCG00000008352 N 0.000
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.000
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.000
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.000
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.000
PNO1 Saccharomyces cerevisiae YOR145C N 0.000
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.000
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.000
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.000
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.000
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.000
Pno1 Mus musculus ENSMUSG00000020116 N 0.000
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.000
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.000
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.000
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.000
PNO1 Homo sapiens ENSG00000115946 N 0.000
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.000
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.000
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.000
PNO1 Microcebus murinus ENSMICG00000010897 N 0.000
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.000
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.000
PNO1 Procavia capensis ENSPCAG00000016146 N 0.000
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.000
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.000
PNO1_IXOSC Ixodes scapularis ISCW023560 N 0.000
PTRG_02803 Pyrenophora tritici repentis PTRG_02803 N 0.000
PTTG_01898 Puccinia triticina PTTG_01898 N 0.000
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.000
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.000
Q8AVH4 Xenopus laevis Q8AVH4 N 0.000
rbp28 Schizosaccharomyces pombe SPAC2C4.11c N 0.000
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.000
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.000
SAKL0G03740g Lachancea kluyveri SAKL0G03740g N 0.000
Scas_Contig632.19 Saccharomyces castellii Scas_Contig632.19 N 0.000
SJAG_03872 Schizosaccharomyces japonicus SJAG_03872 N 0.000
Skud_Contig1833.8 Saccharomyces kudriavzevii Skud_Contig1833.8 N 0.000
SNOG_03777 Stagonospora nodorum SNOG_03777 N 0.000
SOCG_04140 Schizosaccharomyces octosporus SOCG_04140 N 0.000
SPOG_00402 Schizosaccharomyces cryophilus SPOG_00402 N 0.000
SPPG_04498 Spizellomyces punctatus SPPG_04498 N 0.000
SS1G_04290 Sclerotinia sclerotiorum SS1G_04290 N 0.000
TEQG_07954 Trichophyton equinum TEQG_07954 N 0.000
TERG_01665 Trichophyton rubrum TERG_01665 N 0.000
TESG_04215 Trichophyton tonsurans TESG_04215 N 0.000
TRV_03730 Trichophyton verrucosum TRV_03730 N 0.000
UM03495 Ustilago maydis UM03495 N 0.000
UREG_07832 Uncinocarpus reesii UREG_07832 N 0.000
WUBG_12774 Wuchereria bancrofti WUBG_12774 N 0.000
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.000
XM_001110046.1 Macaca mulatta ENSMMUG00000003556 N 0.000
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.000
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.000
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.000
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.000
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.000
YALI0E01122g Yarrowia lipolytica YALI0E01122g N 0.000
ZYRO0D11440g Zygosaccharomyces rouxii ZYRO0D11440g N 0.000