30169.m006347 (Ricinus communis)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 30169.m006347 T62297_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30169.m006347 YTH 485 566

Links

Other YTH family RBPs
Other Ricinus communis RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.829
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.736
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.747
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.758
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.802
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.802
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.802
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.802
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.791
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.791
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.791
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.791
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.791
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.802
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.802
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.802
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.802
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.802
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.802
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.802
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.802
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.802
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.802
cassava35664.valid.m1 Manihot esculenta cassava35664.valid.m1 N 0.817
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.802
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.802
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.802
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.802
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.802
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.747
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.747
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.736
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.714
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.725
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.714
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.703
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.714
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.703
MDP0000124048 Malus x domestica MDP0000124048 N 0.758
MDP0000129009 Malus x domestica MDP0000129009 N 0.758
MDP0000199885 Malus x domestica MDP0000199885 N 0.720
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
MDP0000718677 Malus x domestica MDP0000718677 N 0.758
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.714
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.769
mgf013853m Mimulus guttatus mgf013853m N 0.769
mgf013935m Mimulus guttatus mgf013935m N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.707
PK23716.1 Cannabis sativa PK23716.1 N 0.758
SB01G005500 Sorghum bicolor Sb01g005500 N 0.725
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.714
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.736
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.747
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.736