ECT1 (Arabidopsis thaliana)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 AT3G03950-TAIR-G T61931_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G03950.1-P YTH 292 382
AT3G03950.2-P YTH 291 381
AT3G03950.3-P YTH 295 385

Links

Other YTH family RBPs
Other Arabidopsis thaliana RBPs

160 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.989
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.868
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.868
MDP0000718677 Malus x domestica MDP0000718677 N 0.857
MDP0000129009 Malus x domestica MDP0000129009 N 0.857
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.835
PK23716.1 Cannabis sativa PK23716.1 N 0.835
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.824
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.824
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.824
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.824
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.824
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.824
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.824
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.824
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.824
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.813
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.813
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.813
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.813
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.813
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.813
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.813
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.813
29950.m001140 Ricinus communis 29950.m001140 N 0.813
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.813
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.813
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.813
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.813
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.813
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.813
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.813
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.813
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.813
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.802
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.802
MDP0000124048 Malus x domestica MDP0000124048 N 0.802
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.802
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.802
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.791
SB01G005500 Sorghum bicolor Sb01g005500 N 0.791
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.791
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.791
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.791
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.791
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.791
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.791
mgf013935m Mimulus guttatus mgf013935m N 0.791
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.791
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.791
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.791
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.791
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.791
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.791
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.791
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.780
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.780
mgf009938m Mimulus guttatus mgf009938m N 0.780
mgf013853m Mimulus guttatus mgf013853m N 0.780
MDP0000488588 Malus x domestica MDP0000488588 N 0.780
SB02G003990 Sorghum bicolor Sb02g003990 N 0.780
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.769
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.769
SB01G008170 Sorghum bicolor Sb01g008170 N 0.769
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.758
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.758
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.758
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.758
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.758
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
MDP0000171737 Malus x domestica MDP0000171737 N 0.747
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.747
29929.m004643 Ricinus communis 29929.m004643 N 0.747
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.747
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.747
PK17832.1 Cannabis sativa PK17832.1 N 0.747
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
MDP0000306387 Malus x domestica MDP0000306387 N 0.736
ppa002483m Prunus persica ppa002483m N 0.736
ppa002588m Prunus persica ppa002588m N 0.736
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.736
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.736
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.736
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.736
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.736
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.725
PK23104.1 Cannabis sativa PK23104.1 N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.725
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.725
SB07G024500 Sorghum bicolor Sb07g024500 N 0.725
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.725
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.725
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.725
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.725
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.725
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.725
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.725
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.725
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.714
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
ppa018635m Prunus persica ppa018635m N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.714
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
ppa003664m Prunus persica ppa003664m N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.714
29955.m001158 Ricinus communis 29955.m001158 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.714
SB07G006330 Sorghum bicolor Sb07g006330 N 0.714
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
30169.m006347 Ricinus communis 30169.m006347 N 0.714
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.703
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.703
SB06G027960 Sorghum bicolor Sb06g027960 N 0.703
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703