GRMZM2G126338 (Zea mays)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 GRMZM2G126338 T62439_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G126338_P01 YTH 486 576
GRMZM2G126338_P02 YTH 487 577

Links

Other YTH family RBPs
Other Zea mays RBPs

184 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB01G008170 Sorghum bicolor Sb01g008170 N 0.989
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.934
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.923
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.890
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.879
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.879
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.879
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.879
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.868
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.868
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.868
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.868
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.868
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.868
mgf013935m Mimulus guttatus mgf013935m N 0.868
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.868
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.868
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.868
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.868
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.868
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.868
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.868
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.857
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.857
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.857
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.857
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.857
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.857
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.857
PK23716.1 Cannabis sativa PK23716.1 N 0.857
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.857
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.857
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.857
mgf013853m Mimulus guttatus mgf013853m N 0.846
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.846
mgf009938m Mimulus guttatus mgf009938m N 0.846
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.835
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.835
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.835
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.835
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.835
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.835
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.835
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.835
MDP0000718677 Malus x domestica MDP0000718677 N 0.835
MDP0000129009 Malus x domestica MDP0000129009 N 0.824
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.824
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.824
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.824
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.813
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.813
SB02G003990 Sorghum bicolor Sb02g003990 N 0.813
SB01G005500 Sorghum bicolor Sb01g005500 N 0.813
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.813
SB07G006330 Sorghum bicolor Sb07g006330 N 0.813
SB07G024500 Sorghum bicolor Sb07g024500 N 0.813
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.813
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.813
MDP0000124048 Malus x domestica MDP0000124048 N 0.813
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.813
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.813
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.813
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.802
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.802
MDP0000488588 Malus x domestica MDP0000488588 N 0.802
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.802
29950.m001140 Ricinus communis 29950.m001140 N 0.802
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.802
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.802
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.791
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.791
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.791
SB06G027960 Sorghum bicolor Sb06g027960 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.780
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.780
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.780
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.780
PK17832.1 Cannabis sativa PK17832.1 N 0.780
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.780
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.780
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.780
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.769
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.769
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.769
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.769
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.769
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.769
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
MDP0000617859 Malus x domestica MDP0000617859 N 0.758
ppa002483m Prunus persica ppa002483m N 0.758
ppa002588m Prunus persica ppa002588m N 0.758
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.758
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.758
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.758
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.758
MDP0000405927 Malus x domestica MDP0000405927 N 0.758
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.758
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.758
MDP0000287088 Malus x domestica MDP0000287088 N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.758
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.747
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.747
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.747
PK05579.1 Cannabis sativa PK05579.1 N 0.747
MDP0000248088 Malus x domestica MDP0000248088 N 0.747
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.747
ppa003664m Prunus persica ppa003664m N 0.747
MDP0000552419 Malus x domestica MDP0000552419 N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.736
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.736
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.736
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.736
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
29890.m000285 Ricinus communis 29890.m000285 N 0.736
mgf019846m Mimulus guttatus mgf019846m N 0.736
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.736
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.725
SB09G000580 Sorghum bicolor Sb09g000580 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
ppa018635m Prunus persica ppa018635m N 0.725
PK26094.1 Cannabis sativa PK26094.1 N 0.725
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.714
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.714
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.714
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
29955.m001158 Ricinus communis 29955.m001158 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
mgf001716m Mimulus guttatus mgf001716m N 0.703
mgf014829m Mimulus guttatus mgf014829m N 0.703
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703
PK23104.1 Cannabis sativa PK23104.1 N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.703
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.703
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.703
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.703
30169.m006347 Ricinus communis 30169.m006347 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703