ECT4 (Arabidopsis thaliana)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 AT1G55500-TAIR-G T61929_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G55500.1-P YTH 408 498

Links

Other YTH family RBPs
Other Arabidopsis thaliana RBPs

143 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.956
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.923
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.923
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.890
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.890
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.890
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.890
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.868
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.868
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.868
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.868
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.868
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.868
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.868
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.868
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.868
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.868
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.868
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.868
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.868
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.868
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.868
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.868
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.868
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.857
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.857
MDP0000718677 Malus x domestica MDP0000718677 N 0.857
MDP0000124048 Malus x domestica MDP0000124048 N 0.857
PK23716.1 Cannabis sativa PK23716.1 N 0.857
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.857
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.846
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.846
MDP0000129009 Malus x domestica MDP0000129009 N 0.846
mgf013853m Mimulus guttatus mgf013853m N 0.835
mgf013935m Mimulus guttatus mgf013935m N 0.835
mgf009938m Mimulus guttatus mgf009938m N 0.835
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.824
MDP0000488588 Malus x domestica MDP0000488588 N 0.824
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.824
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.813
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.813
SB01G005500 Sorghum bicolor Sb01g005500 N 0.802
SB01G008170 Sorghum bicolor Sb01g008170 N 0.802
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.802
SB02G003990 Sorghum bicolor Sb02g003990 N 0.802
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.802
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.802
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.802
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.802
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.802
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.791
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.791
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.791
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.780
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.780
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.780
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.758
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.758
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.758
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.758
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.758
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.747
SB06G027960 Sorghum bicolor Sb06g027960 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.747
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.747
29950.m001140 Ricinus communis 29950.m001140 N 0.736
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.736
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
MDP0000306387 Malus x domestica MDP0000306387 N 0.736
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.736
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.736
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.725
ppa003664m Prunus persica ppa003664m N 0.725
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.725
ppa018635m Prunus persica ppa018635m N 0.725
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.725
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.725
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.725
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.725
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.714
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
30169.m006347 Ricinus communis 30169.m006347 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.714
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.714
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
PK17832.1 Cannabis sativa PK17832.1 N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.703
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.703
ppa002588m Prunus persica ppa002588m N 0.703
ppa002483m Prunus persica ppa002483m N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.703
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.703
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703