Medtr8g005290 (Medicago truncatula)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Medtr8g005290 T21437_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr8g005290.1 KH 139 210

Links

Other KH family RBPs
Other Medicago truncatula RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002881558.1 Arabidopsis lyrata fgenesh2_kg.4__1930__AT2G38610.2 N 0.859
XM_002882529.1 Arabidopsis lyrata fgenesh2_kg.3__864__AT3G08620.1 N 0.827
AT2G38610 Arabidopsis thaliana AT2G38610-TAIR-G N 0.859
AT3G08620 Arabidopsis thaliana AT3G08620-TAIR-G N 0.840
BRADI1G04120 Brachypodium distachyon BRADI1G04120 N 0.738
BRADI2G22090 Brachypodium distachyon BRADI2G22090 N 0.738
BRADI1G53760 Brachypodium distachyon BRADI1G53760 N 0.732
PK22673.1 Cannabis sativa PK22673.1 N 0.880
PK23097.1 Cannabis sativa PK23097.1 N 0.986
Cucsa.177080 Cucumis sativus Cucsa.177080 N 0.892
Cucsa.130740 Cucumis sativus Cucsa.130740 N 0.933
Glyma18g44980.1 Glycine max Glyma18g44980.1 N 0.933
Glyma11g31530.1 Glycine max Glyma11g31530.1 N 0.865
Glyma18g05680.1 Glycine max Glyma18g05680.1 N 0.795
Glyma03g00370.1 Glycine max Glyma03g00370.1 N 0.819
Glyma02g40440.1 Glycine max Glyma02g40440.1 N 0.853
Glyma14g38730.1 Glycine max Glyma14g38730.1 N 0.853
Glyma16g34750.1 Glycine max Glyma16g34750.1 N 0.958
Glyma09g40820.1 Glycine max Glyma09g40820.1 N 0.947
chr3.CM0634.210.nc Lotus japonicus chr3.CM0634.210.nc N 0.882
LjSGA_139736.1.1 Lotus japonicus LjSGA_139736.1.1 N 0.753
LjT28H07.110.nc Lotus japonicus LjT28H07.110.nc N 0.947
MDP0000665847 Malus x domestica MDP0000665847 N 0.973
MDP0000501473 Malus x domestica MDP0000501473 N 0.972
MDP0000186494 Malus x domestica MDP0000186494 N 0.973
MDP0000119110 Malus x domestica MDP0000119110 N 0.972
cassava39581.m1 Manihot esculenta cassava39581.m1 N 0.972
cassava25198.valid.m1 Manihot esculenta cassava25198.valid.m1 N 0.931
cassava38069.valid.m1 Manihot esculenta cassava38069.valid.m1 N 0.778
Medtr8g005390 Medicago truncatula Medtr8g005390 N 1.000
Medtr7g080640 Medicago truncatula Medtr7g080640 N 0.882
Medtr3g083820 Medicago truncatula Medtr3g083820 N 0.827
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.775
mgf005196m Mimulus guttatus mgf005196m N 0.893
mgf011994m Mimulus guttatus mgf011994m N 0.836
BGIOSIBCE024206 Oryza indica BGIOSIBCE024206 N 0.732
BGIOSIBCE019437 Oryza indica BGIOSIBCE019437 N 0.718
BGIOSIBCE013438 Oryza indica BGIOSIBCE013438 N 0.792
LOC_Os01g60260 Oryza sativa LOC_Os01g60260 N 0.732
LOC_Os03g60110 Oryza sativa LOC_Os03g60110 N 0.819
LOC_Os05g40290 Oryza sativa LOC_Os05g40290 N 0.718
LOC_Os07g12490 Oryza sativa LOC_Os07g12490 N 0.720
PDK_20s1595621g003 Phoenix dactylifera PDK_20s1595621g003 N 0.878
POPTR_0016s14760 Populus trichocarpa POPTR_0016s14760 N 0.800
B9INJ7_POPTR Populus trichocarpa POPTR_0019s15270 N 0.861
B9I777_POPTR Populus trichocarpa POPTR_0013s15580 N 0.792
B9IGX2_POPTR Populus trichocarpa POPTR_0006s11210 N 0.920
ppa009701m Prunus persica ppa009701m N 0.947
27955.m000377 Ricinus communis 27955.m000377 N 0.932
29945.m000086 Ricinus communis 29945.m000086 N 0.792
SB03G038070 Sorghum bicolor Sb03g038070 N 0.718
SB02G006770 Sorghum bicolor Sb02g006770 N 0.863
SB09G023640 Sorghum bicolor Sb09g023640 N 0.735
SB01G003680 Sorghum bicolor Sb01g003680 N 0.822
GSVIVG00029865001 Vitis vinifera GSVIVG00029865001 N 0.917
GSVIVG00024534001 Vitis vinifera GSVIVG00024534001 N 0.740
AC218972.3_FG007 Zea mays AC218972.3_FG007 N 0.706
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.863
GRMZM2G108677 Zea mays GRMZM2G108677 N 0.808
GRMZM2G093006 Zea mays GRMZM2G093006 N 0.706
GRMZM2G085582 Zea mays GRMZM2G085582 N 0.747
GRMZM2G063643 Zea mays GRMZM2G063643 N 0.822
GRMZM2G122569 Zea mays GRMZM2G122569 N 0.747