MDP0000191652 (Malus x domestica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 MDP0000191652 T25191_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000191652 PUF 721 755
MDP0000191652 PUF 758 790
MDP0000191652 PUF 793 827
MDP0000191652 PUF 829 863
MDP0000191652 PUF 865 897
MDP0000191652 PUF 902 922
MDP0000191652 PUF 992 1026
MDP0000191652 PUF 1039 1068

Links

Other PUF family RBPs
Other Malus x domestica RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.844
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.853
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.853
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.833
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.851
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.000
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.745
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.745
PK00601.1 Cannabis sativa PK00601.1 N 0.801
PK21390.1 Cannabis sativa PK21390.1 N 0.883
PK01617.1 Cannabis sativa PK01617.1 N 0.708
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.879
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.757
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.000
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.703
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.865
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.865
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.872
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.865
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.869
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.897
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.000
MDP0000319167 Malus x domestica MDP0000319167 N 0.904
MDP0000314338 Malus x domestica MDP0000314338 N 0.796
MDP0000176743 Malus x domestica MDP0000176743 N 0.000
MDP0000776183 Malus x domestica MDP0000776183 N 0.793
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.880
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.886
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.875
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.875
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.716
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.800
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.000
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.864
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.721
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.861
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.000
mgf015734m Mimulus guttatus mgf015734m N 0.853
mgf015234m Mimulus guttatus mgf015234m N 0.767
mgf011401m Mimulus guttatus mgf011401m N 0.702
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.742
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.753
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.799
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.000
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.753
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.742
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.742
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.745
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.745
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.857
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.793
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.000
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.839
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.807
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.709
ppa000626m Prunus persica ppa000626m N 0.793
ppa000627m Prunus persica ppa000627m N 0.911
ppa000731m Prunus persica ppa000731m N 0.714
30143.m001162 Ricinus communis 30143.m001162 N 0.768
30143.m001164 Ricinus communis 30143.m001164 N 0.804
29595.m000292 Ricinus communis 29595.m000292 N 0.000
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.736
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.703
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.703
SB09G001090 Sorghum bicolor Sb09g001090 N 0.748
SB03G039600 Sorghum bicolor Sb03g039600 N 0.789
SB04G037410 Sorghum bicolor Sb04g037410 N 0.000
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.000
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.801
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.862
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.745
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.741
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.000