Medtr5g087730 (Medicago truncatula)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Medtr5g087730 T24978_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr5g087730.1 PUF 693 727
Medtr5g087730.1 PUF 729 763
Medtr5g087730.1 PUF 765 786
Medtr5g087730.1 PUF 823 857
Medtr5g087730.1 PUF 859 894
Medtr5g087730.1 PUF 901 930
Medtr5g087730.1 PUF 932 965
Medtr5g087730.1 PUF 979 1008

Links

Other PUF family RBPs
Other Medicago truncatula RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30143.m001164 Ricinus communis 30143.m001164 N 0.848
ppa000626m Prunus persica ppa000626m N 0.844
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.841
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.841
PK00601.1 Cannabis sativa PK00601.1 N 0.837
MDP0000776183 Malus x domestica MDP0000776183 N 0.833
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.830
MDP0000314338 Malus x domestica MDP0000314338 N 0.826
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.822
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.819
mgf015234m Mimulus guttatus mgf015234m N 0.801
SB03G039600 Sorghum bicolor Sb03g039600 N 0.800
SB09G001090 Sorghum bicolor Sb09g001090 N 0.799
30143.m001162 Ricinus communis 30143.m001162 N 0.797
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.797
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.797
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.796
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.795
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.793
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.793
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.793
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.793
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.793
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.792
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.792
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.790
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.789
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.789
PK21390.1 Cannabis sativa PK21390.1 N 0.786
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.786
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.786
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.786
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.785
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.783
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.783
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.783
mgf015734m Mimulus guttatus mgf015734m N 0.779
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.775
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.775
MDP0000319167 Malus x domestica MDP0000319167 N 0.772
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.772
ppa000627m Prunus persica ppa000627m N 0.772
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.772
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.768
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.764
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.764
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.764
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.764
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.753
PK01617.1 Cannabis sativa PK01617.1 N 0.750
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.738
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.736
ppa000731m Prunus persica ppa000731m N 0.735
29595.m000292 Ricinus communis 29595.m000292 N 0.728
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.728
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.727
MDP0000191652 Malus x domestica MDP0000191652 N 0.721
MDP0000176743 Malus x domestica MDP0000176743 N 0.720
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.714
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.713
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.711
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.710
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.710
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.710
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.705
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.705
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.700