30143.m001162 (Ricinus communis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 30143.m001162 T24681_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30143.m001162 PUF 663 697
30143.m001162 PUF 699 720
30143.m001162 PUF 745 779
30143.m001162 PUF 781 815
30143.m001162 PUF 817 852
30143.m001162 PUF 854 888
30143.m001162 PUF 890 924
30143.m001162 PUF 937 966

Links

Other PUF family RBPs
Other Ricinus communis RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30143.m001164 Ricinus communis 30143.m001164 N 0.942
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.917
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.909
PK00601.1 Cannabis sativa PK00601.1 N 0.906
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.906
ppa000626m Prunus persica ppa000626m N 0.895
MDP0000776183 Malus x domestica MDP0000776183 N 0.884
MDP0000314338 Malus x domestica MDP0000314338 N 0.884
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.874
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.870
mgf015234m Mimulus guttatus mgf015234m N 0.855
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.848
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.833
SB03G039600 Sorghum bicolor Sb03g039600 N 0.830
PK21390.1 Cannabis sativa PK21390.1 N 0.830
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.826
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.826
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.825
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.825
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.822
ppa000627m Prunus persica ppa000627m N 0.822
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.822
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.821
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.821
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.819
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.819
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.819
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.819
SB09G001090 Sorghum bicolor Sb09g001090 N 0.817
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.814
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.814
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.814
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.812
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.812
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.812
MDP0000319167 Malus x domestica MDP0000319167 N 0.812
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.812
mgf015734m Mimulus guttatus mgf015734m N 0.812
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.810
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.808
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.808
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.804
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.797
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.783
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.779
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.779
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.775
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.772
MDP0000191652 Malus x domestica MDP0000191652 N 0.768
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.764
ppa000731m Prunus persica ppa000731m N 0.762
29595.m000292 Ricinus communis 29595.m000292 N 0.758
PK01617.1 Cannabis sativa PK01617.1 N 0.758
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.755
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.750
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.745
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.744
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.744
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.740
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.740
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.733
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.733
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.733
MDP0000176743 Malus x domestica MDP0000176743 N 0.729
SB04G037410 Sorghum bicolor Sb04g037410 N 0.729
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.726
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.726
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.726
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.726
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.726
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.717
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.715
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.715
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.713
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.708
MDP0000119814 Malus x domestica MDP0000119814 N 0.704