XM_002880988.1 (Arabidopsis lyrata)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 fgenesh2_kg.4__898__AT2G29200.1 T24365_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.4__898__AT2G29200.1 PUF 631 665
fgenesh2_kg.4__898__AT2G29200.1 PUF 667 701
fgenesh2_kg.4__898__AT2G29200.1 PUF 703 737
fgenesh2_kg.4__898__AT2G29200.1 PUF 739 773
fgenesh2_kg.4__898__AT2G29200.1 PUF 775 810
fgenesh2_kg.4__898__AT2G29200.1 PUF 817 845
fgenesh2_kg.4__898__AT2G29200.1 PUF 848 882
fgenesh2_kg.4__898__AT2G29200.1 PUF 895 924

Links

Other PUF family RBPs
Other Arabidopsis lyrata RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.985
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.981
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.981
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.978
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.960
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.906
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.888
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.884
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.884
MDP0000319167 Malus x domestica MDP0000319167 N 0.877
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.876
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.873
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.873
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.870
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.870
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.866
ppa000627m Prunus persica ppa000627m N 0.866
PK21390.1 Cannabis sativa PK21390.1 N 0.862
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.859
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.859
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.859
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.859
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.848
MDP0000191652 Malus x domestica MDP0000191652 N 0.844
mgf015734m Mimulus guttatus mgf015734m N 0.837
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.833
SB03G039600 Sorghum bicolor Sb03g039600 N 0.826
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.819
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.819
PK00601.1 Cannabis sativa PK00601.1 N 0.812
MDP0000314338 Malus x domestica MDP0000314338 N 0.812
ppa000626m Prunus persica ppa000626m N 0.812
MDP0000776183 Malus x domestica MDP0000776183 N 0.812
30143.m001164 Ricinus communis 30143.m001164 N 0.812
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.808
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.808
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.797
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.786
mgf015234m Mimulus guttatus mgf015234m N 0.779
30143.m001162 Ricinus communis 30143.m001162 N 0.772
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.771
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.771
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.768
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.767
SB09G001090 Sorghum bicolor Sb09g001090 N 0.767
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.763
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.763
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.763
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.757
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.757
PK01617.1 Cannabis sativa PK01617.1 N 0.755
ppa000731m Prunus persica ppa000731m N 0.754
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.754
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.747
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.741
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.740
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.740
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.739
29595.m000292 Ricinus communis 29595.m000292 N 0.736
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.736
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.736
mgf011401m Mimulus guttatus mgf011401m N 0.732
SB04G037410 Sorghum bicolor Sb04g037410 N 0.729
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.729
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.729
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.728
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.727
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.726
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.726
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.725
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.722
MDP0000176743 Malus x domestica MDP0000176743 N 0.717
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.710
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.703
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.700