Glyma10g35290.1 (Glycine max)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Glyma10g35290.1 T24884_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma10g35290.1 PUF 635 669
Glyma10g35290.1 PUF 671 705
Glyma10g35290.1 PUF 707 741
Glyma10g35290.1 PUF 743 777
Glyma10g35290.1 PUF 779 813
Glyma10g35290.1 PUF 816 850
Glyma10g35290.1 PUF 852 886
Glyma10g35290.1 PUF 899 928

Links

Other PUF family RBPs
Other Glycine max RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.967
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.931
ppa000731m Prunus persica ppa000731m N 0.899
PK01617.1 Cannabis sativa PK01617.1 N 0.884
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.873
29595.m000292 Ricinus communis 29595.m000292 N 0.870
MDP0000176743 Malus x domestica MDP0000176743 N 0.866
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.862
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.851
MDP0000119814 Malus x domestica MDP0000119814 N 0.851
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.848
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.834
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.830
mgf011401m Mimulus guttatus mgf011401m N 0.804
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.801
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.796
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.793
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.790
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.787
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.787
SB04G037410 Sorghum bicolor Sb04g037410 N 0.785
PK00601.1 Cannabis sativa PK00601.1 N 0.783
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.782
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.780
30143.m001164 Ricinus communis 30143.m001164 N 0.780
ppa000626m Prunus persica ppa000626m N 0.780
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.776
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.773
SB03G039600 Sorghum bicolor Sb03g039600 N 0.769
MDP0000314338 Malus x domestica MDP0000314338 N 0.769
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.768
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.768
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.765
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.762
MDP0000776183 Malus x domestica MDP0000776183 N 0.762
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.762
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.762
mgf015734m Mimulus guttatus mgf015734m N 0.761
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.761
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.757
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.757
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.755
PK21390.1 Cannabis sativa PK21390.1 N 0.755
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.755
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.755
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.755
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.755
SB09G001090 Sorghum bicolor Sb09g001090 N 0.754
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.751
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.751
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.751
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.751
ppa000627m Prunus persica ppa000627m N 0.750
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.750
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.750
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.750
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.750
mgf015234m Mimulus guttatus mgf015234m N 0.747
MDP0000319167 Malus x domestica MDP0000319167 N 0.746
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.746
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.743
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.743
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.740
30143.m001162 Ricinus communis 30143.m001162 N 0.740
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.740
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.739
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.738
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.736
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.730
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.729
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.729
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.726
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.722
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.721
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.718
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.718
MDP0000191652 Malus x domestica MDP0000191652 N 0.703