APUM3 (Arabidopsis thaliana)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 AT2G29140-TAIR-G T24018_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT2G29140.1-P PUF 626 660
AT2G29140.1-P PUF 662 695
AT2G29140.1-P PUF 698 732
AT2G29140.1-P PUF 734 768
AT2G29140.1-P PUF 770 805
AT2G29140.1-P PUF 808 840
AT2G29140.1-P PUF 843 877
AT2G29140.1-P PUF 890 919

Links

Other PUF family RBPs
Other Arabidopsis thaliana RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.967
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.967
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.960
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.956
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.945
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.895
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.880
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.880
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.876
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.876
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.873
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.873
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.873
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.873
MDP0000319167 Malus x domestica MDP0000319167 N 0.870
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.869
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.869
ppa000627m Prunus persica ppa000627m N 0.865
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.865
PK21390.1 Cannabis sativa PK21390.1 N 0.862
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.858
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.858
mgf015734m Mimulus guttatus mgf015734m N 0.847
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.844
MDP0000191652 Malus x domestica MDP0000191652 N 0.843
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.826
SB03G039600 Sorghum bicolor Sb03g039600 N 0.819
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.816
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.812
MDP0000776183 Malus x domestica MDP0000776183 N 0.808
PK00601.1 Cannabis sativa PK00601.1 N 0.808
ppa000626m Prunus persica ppa000626m N 0.808
30143.m001164 Ricinus communis 30143.m001164 N 0.808
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.804
MDP0000314338 Malus x domestica MDP0000314338 N 0.804
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.804
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.793
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.790
mgf015234m Mimulus guttatus mgf015234m N 0.779
30143.m001162 Ricinus communis 30143.m001162 N 0.775
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.771
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.771
SB09G001090 Sorghum bicolor Sb09g001090 N 0.767
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.767
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.767
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.767
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.763
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.760
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.757
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.757
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.753
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.751
ppa000731m Prunus persica ppa000731m N 0.750
PK01617.1 Cannabis sativa PK01617.1 N 0.747
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.745
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.744
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.743
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.740
29595.m000292 Ricinus communis 29595.m000292 N 0.736
SB04G037410 Sorghum bicolor Sb04g037410 N 0.733
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.733
mgf011401m Mimulus guttatus mgf011401m N 0.732
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.729
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.729
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.728
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.726
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.725
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.724
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.724
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.722
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.717
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.714
MDP0000176743 Malus x domestica MDP0000176743 N 0.714
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.703