PK04894.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK04894.1 T31639_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK04894.1 RRM 116 183
PK04894.1 RRM 213 281

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.854
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.810
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.788
XM_002874153.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001957 N 0.723
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.847
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.796
CID13 Arabidopsis thaliana AT5G24440-TAIR-G N 0.730
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.832
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.810
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.781
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.781
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.847
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.854
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.781
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.774
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.745
PK12463.1 Cannabis sativa PK12463.1 N 0.891
PK28889.1 Cannabis sativa PK28889.1 N 0.810
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.703
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.883
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.796
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.803
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.891
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.912
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.905
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.905
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.752
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.745
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.774
MDP0000233630 Malus x domestica MDP0000233630 N 0.949
MDP0000223003 Malus x domestica MDP0000223003 N 0.745
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.869
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.869
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.861
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.861
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.891
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.723
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.861
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.810
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.869
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.861
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.912
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.869
mgf005336m Mimulus guttatus mgf005336m N 0.745
mgf014445m Mimulus guttatus mgf014445m N 0.745
mgf013366m Mimulus guttatus mgf013366m N 0.861
mgf012896m Mimulus guttatus mgf012896m N 0.883
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.788
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.730
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.876
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.876
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.781
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.788
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.745
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.774
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.905
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.905
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.730
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.715
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.737
ppa009298m Prunus persica ppa009298m N 0.825
ppa006808m Prunus persica ppa006808m N 0.964
29485.m000140 Ricinus communis 29485.m000140 N 0.861
30068.m002593 Ricinus communis 30068.m002593 N 0.891
29650.m000268 Ricinus communis 29650.m000268 N 0.796
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.869
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.869
SB10G021290 Sorghum bicolor Sb10g021290 N 0.730
SB07G001560 Sorghum bicolor Sb07g001560 N 0.891
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.774
SB03G002180 Sorghum bicolor Sb03g002180 N 0.737
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.832
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.920
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.905
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.891
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.715
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.730
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.891
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.737
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.730
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.803