ENSCSAVG00000005823 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000005823 T35986_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000009906 RRM 47 117

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.718
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.704
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.775
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.761
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.000
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.746
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.761
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.789
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.775
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.000
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.000
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.000
An12g03930 Aspergillus niger CADANGAG00009835 N 0.000
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.000
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.000
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.746
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.761
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.000
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.746
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.746
Bm1_02935 Brugia malayi Bm1_02935 N 0.718
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.761
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.761
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.000
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.000
CAOG_06930 Capsaspora owczarzaki CAOG_06930 N 0.000
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.746
gw1.14.317.1 Chlorella NC64A gw1.14.317.1 N 0.000
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.000
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.746
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.944
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.944
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.000
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.000
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.000
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.000
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.000
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.761
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.761
ncbp2 Danio rerio ENSDARG00000014898 N 0.704
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.732
GF16759 Drosophila ananassae FBgn0093780 N 0.718
GG22670 Drosophila erecta FBgn0114835 N 0.718
GH15101 Drosophila grimshawi FBgn0122576 N 0.718
Cbp20 Drosophila melanogaster FBgn0022943 N 0.718
GI23717 Drosophila mojavensis FBgn0146442 N 0.718
GL12592 Drosophila persimilis FBgn0150198 N 0.718
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.718
GM15280 Drosophila sechellia FBgn0170200 N 0.718
GD19204 Drosophila simulans FBgn0190709 N 0.718
GJ23276 Drosophila virilis FBgn0210378 N 0.718
GJ18756 Drosophila virilis FBgn0205908 N 0.704
GK11244 Drosophila willistoni FBgn0213255 N 0.718
GE25514 Drosophila yakuba FBgn0242580 N 0.718
NCBP2 Equus caballus ENSECAG00000016153 N 0.761
NCBP2L Equus caballus ENSECAG00000003478 N 0.000
NCBP2 Gallus gallus ENSGALG00000006843 N 0.732
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.000
91084 Helobdella robusta 91084 N 0.732
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.000
NCBP2 Homo sapiens ENSG00000114503 N 0.761
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.746
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.761
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.746
LOAG_03270 Loa loa LOAG_03270 N 0.732
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.746
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.704
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.761
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.761
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.746
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.761
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.000
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.789
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.732
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.761
NCBP2L Microcebus murinus ENSMICG00000016081 N 0.000
MCYG_04468 Microsporum canis MCYG_04468 N 0.000
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.000
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.732
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.732
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.761
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.761
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.000
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.761
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.000
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.761
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.775
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.718
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.000
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.000
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.000
NCU00210 Neurospora crassa NCU00210 N 0.000
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.000
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.746
SNAPOd2T00014922001 Oikopleura dioica SNAPOd2T00014922001 N 0.732
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.746
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.761
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.704
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.761
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.761
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.000
PHUM535920 Pediculus humanus PHUM535920 N 0.761
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.000
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.000
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.000
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.000
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.000
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.761
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.732
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.746
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.761
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.000
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.761
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.000
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.000
NCBP2 Sorex araneus ENSSARG00000014294 N 0.704
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.761
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.000
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.000
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.746
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.746
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.000
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.761
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.761
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.746
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.775
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.718
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.704
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.704
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.000
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.000
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.000
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.000
TERG_03424 Trichophyton rubrum TERG_03424 N 0.000
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.000
e_gw1.1.927.1 Trichoplax adhaerens e_gw1.1.927.1 N 0.000
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.000
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.761
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.761
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.761
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.732
2118330B Xenopus laevis 2118330B N 0.761
AAH72902 Xenopus laevis AAH72902 N 0.761
CAA59259 Xenopus laevis CAA59259 N 0.761
P52299 Xenopus laevis P52299 N 0.761
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.732