CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPH1
(
Tursiops truncatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTTRG00000000470
T42526_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPH2
M151_0.6
Homo sapiens
GGGAGGG
RNAcompete
Ray et al.(2013)
RNCMPT00160
0.838
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000000443
RRM
4
51
QNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE
ENSTTRP00000000443
RRM
80
147
VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHXX
ENSTTRP00000000443
RRM
258
325
VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE
Links
Other
RRM
family RBPs
Other
Tursiops truncatus
RBPs
88 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R019333
Ailuropoda melanoleuca
Ame_R019333
I
0.000
MSI1
Anolis carolinensis
ENSACAG00000002762
I
0.000
AGAP006656
Anopheles gambiae
AGAP006656
N
0.000
MSI1
Callithrix jacchus
ENSCJAG00000008578
I
0.000
LOC100390978
Callithrix jacchus
ENSCJAG00000013998
I
0.000
MSI1
Canis familiaris
ENSCAFG00000010283
I
0.000
MSI2
Canis familiaris
ENSCAFG00000017418
I
0.000
estExt_Genewise1Plus.C_620039
Capitella teleta
estExt_Genewise1Plus.C_620039
I
0.000
MSI1
Cavia porcellus
ENSCPOG00000012361
I
0.000
MSI2
Cavia porcellus
ENSCPOG00000008752
N
0.000
msi2b
Danio rerio
ENSDARG00000032614
I
0.000
msi2a
Danio rerio
ENSDARG00000033901
I
0.000
msi1
Danio rerio
ENSDARG00000010710
I
0.000
gw1.72.166.1
Daphnia pulex
gw1.72.166.1
I
0.000
MSI1
Dasypus novemcinctus
ENSDNOG00000005713
I
0.000
MSI1
Echinops telfairi
ENSETEG00000004756
I
0.000
LOC100070744
Equus caballus
ENSECAG00000011435
I
0.000
LOC100053469
Equus caballus
ENSECAG00000017526
I
0.000
MSI1
Gasterosteus aculeatus
ENSGACG00000012679
I
0.000
MSI1
Gorilla gorilla
ENSGGOG00000010328
I
0.000
MSI2
Gorilla gorilla
ENSGGOG00000013182
I
0.000
MSI1
Homo sapiens
ENSG00000135097
D
0.000
MSI2
Homo sapiens
ENSG00000153944
I
0.000
MSI1
Loxodonta africana
ENSLAFG00000009412
I
0.000
MSI2
Macaca mulatta
ENSMMUG00000002069
I
0.000
MSI1
Macaca mulatta
ENSMMUG00000031527
I
0.000
MSI1
Macropus eugenii
ENSMEUG00000015759
N
0.000
ENSMGAG00000008742
Meleagris gallopavo
ENSMGAG00000008742
I
0.000
MSI2
Microcebus murinus
ENSMICG00000013598
I
0.000
Msi2
Mus musculus
ENSMUSG00000069769
I
0.000
Msi1
Mus musculus
ENSMUSG00000054256
I
0.000
nasonia_NCBI_hmm598804
Nasonia vitripennis
nasonia_NCBI_hmm598804
N
0.000
MSI1
Ochotona princeps
ENSOPRG00000016879
I
0.000
MSI2
Oryctolagus cuniculus
ENSOCUG00000010440
I
0.000
MSI1
Oryctolagus cuniculus
ENSOCUG00000027716
I
0.000
MSI2
Pan troglodytes
ENSPTRG00000009437
I
0.000
MSI1
Pan troglodytes
ENSPTRG00000005531
I
0.000
ENSPPYG00000005027
Pongo pygmaeus
ENSPPYG00000005027
I
0.000
MSI1
Pteropus vampyrus
ENSPVAG00000002225
I
0.000
MSI2
Pteropus vampyrus
ENSPVAG00000017053
I
0.000
Msi1
Rattus norvegicus
ENSRNOG00000001156
I
0.000
MSI1
Taeniopygia guttata
ENSTGUG00000009534
I
0.000
MSI1
Takifugu rubripes
ENSTRUG00000015636
I
0.000
MSI1
Takifugu rubripes
ENSTRUG00000016249
I
0.000
MSI2
Tarsius syrichta
ENSTSYG00000011839
N
0.000
MSI1
Tetraodon nigroviridis
ENSTNIG00000011469
I
0.000
MSI1
Tursiops truncatus
ENSTTRG00000005663
I
0.000
CBU92439
Xenopus laevis
CBU92439
I
0.000
CBF67566
Xenopus laevis
CBF67566
I
0.000
AAI69841
Xenopus laevis
AAI69841
I
0.000
AAH84959
Xenopus laevis
AAH84959
I
0.000
AAH82667
Xenopus laevis
AAH82667
I
0.000
AAA50004
Xenopus laevis
AAA50004
I
0.000
AAA49920
Xenopus laevis
AAA49920
I
0.000
AAA49919
Xenopus laevis
AAA49919
I
0.000
msi1
Xenopus tropicalis
ENSXETG00000012216
I
0.000