sf3b4 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000011038 T42871_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		1.000
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.875
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.799
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000024144 RRM 4 74
ENSXETP00000024144 RRM 91 162

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.860
AAEL013795 Aedes aegypti AAEL013795 I 0.888
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 1.000
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.755
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.755
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.832
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.832
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 1.000
AGAP001538 Anopheles gambiae AGAP001538 I 0.874
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.881
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.755
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.762
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 1.000
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.979
ENSBTAG00000026365 Bos taurus ENSBTAG00000026365 I 0.812
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.776
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.965
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.965
Bm1_43460 Brugia malayi Bm1_43460 I 0.790
CBN06124 Caenorhabditis brenneri CBN06124 I 0.811
CBG13349 Caenorhabditis briggsae CBG13349 I 0.797
sap-49 Caenorhabditis elegans C08B11.5 D 0.811
CJA19238 Caenorhabditis japonica CJA19238 I 0.797
CRE01639 Caenorhabditis remanei CRE01639 I 0.811
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 1.000
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 1.000
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.923
PK08238.1 Cannabis sativa PK08238.1 I 0.804
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.867
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.727
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 1.000
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.762
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.727
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.769
ENSCING00000002337 Ciona intestinalis ENSCING00000002337 N 0.703
ENSCSAVG00000007809 Ciona savignyi ENSCSAVG00000007809 I 0.706
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.769
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.797
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.888
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.888
sf3b4 Danio rerio ENSDARG00000018574 D 1.000
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.902
ENSDORG00000016366 Dipodomys ordii ENSDORG00000016366 I 0.713
GF20385 Drosophila ananassae FBgn0097392 I 0.874
GG19577 Drosophila erecta FBgn0111779 I 0.874
GH17589 Drosophila grimshawi FBgn0125059 I 0.881
Spx Drosophila melanogaster FBgn0015818 I 0.867
GI16317 Drosophila mojavensis FBgn0139065 I 0.881
GL21313 Drosophila persimilis FBgn0158906 I 0.874
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.874
GM12470 Drosophila sechellia FBgn0167407 I 0.867
GJ15655 Drosophila virilis FBgn0202845 I 0.881
GK19717 Drosophila willistoni FBgn0221715 I 0.874
GE16738 Drosophila yakuba FBgn0234234 I 0.874
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.706
LOC100054350 Equus caballus ENSECAG00000024737 I 1.000
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 1.000
SF3B4 Gallus gallus ENSGALG00000013352 I 1.000
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 1.000
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.797
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.783
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 1.000
99199 Helobdella robusta 99199 I 0.846
SF3B4 Homo sapiens ENSG00000143368 I 1.000
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.853
ISCW010601 Ixodes scapularis ISCW010601 I 0.923
LOAG_01189 Loa loa LOAG_01189 I 0.797
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.909
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 1.000
SF3B4 Macaca mulatta ENSMMUG00000007256 I 1.000
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.937
MDP0000320945 Malus x domestica MDP0000320945 I 0.797
MDP0000131129 Malus x domestica MDP0000131129 I 0.797
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.790
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.797
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 1.000
Minc12926 Meloidogyne incognita Minc12926 I 0.769
Minc02568 Meloidogyne incognita Minc02568 I 0.769
Minc01580 Meloidogyne incognita Minc01580 I 0.769
SF3B4 Microcebus murinus ENSMICG00000000296 I 1.000
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.713
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 1.000
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.762
Sf3b4 Mus musculus ENSMUSG00000068856 I 1.000
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 1.000
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.895
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.888
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 1.000
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.867
ENSOANG00000004768 Ornithorhynchus anatinus ENSOANG00000004768 I 0.710
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 1.000
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.776
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.776
SF3B4 Oryzias latipes ENSORLG00000003062 I 1.000
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.734
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.748
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.748
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 1.000
SF3B4 Pan troglodytes ENSPTRG00000001243 I 1.000
PHUM263440 Pediculus humanus PHUM263440 I 0.881
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.727
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.776
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.790
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.993
ppa007508m Prunus persica ppa007508m I 0.783
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 1.000
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 1.000
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.713
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.713
30183.m001303 Ricinus communis 30183.m001303 I 0.804
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.818
Smp_067420 Schistosoma mansoni Smp_067420 D 0.888
SB01G020190 Sorghum bicolor Sb01g020190 I 0.776
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.966
ENSSTOG00000000684 Spermophilus tridecemlineatus ENSSTOG00000000684 I 0.720
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.797
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.895
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.895
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 1.000
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 1.000
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 1.000
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 1.000
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 1.000
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.860
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 1.000
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 1.000
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.783
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.797
AAH45264 Xenopus laevis AAH45264 I 0.993
AAH77458 Xenopus laevis AAH77458 I 0.993
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.776
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.769