celf5 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000014344 T42893_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.905
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.810
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.758
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.758
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000031370 RRM 9 78
ENSXETP00000031370 RRM 98 165
ENSXETP00000031370 RRM 373 443

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.000
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.000
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.000
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.000
PK13311.1 Cannabis sativa PK13311.1 N 0.000
PK22392.1 Cannabis sativa PK22392.1 N 0.000
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.000
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.000
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.000
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.000
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.000
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.000
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.000
MDP0000191633 Malus x domestica MDP0000191633 N 0.000
MDP0000220851 Malus x domestica MDP0000220851 N 0.000
MDP0000303054 Malus x domestica MDP0000303054 N 0.000
MDP0000303178 Malus x domestica MDP0000303178 N 0.000
MDP0000202850 Malus x domestica MDP0000202850 N 0.000
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.000
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.000
mgf016066m Mimulus guttatus mgf016066m N 0.000
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.000
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.000
ppa006963m Prunus persica ppa006963m N 0.000
ppa007179m Prunus persica ppa007179m N 0.000
ppa007812m Prunus persica ppa007812m N 0.000
29917.m002004 Ricinus communis 29917.m002004 N 0.000
29629.m001425 Ricinus communis 29629.m001425 N 0.000
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.000
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.000
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.000