CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GG21846
(
Drosophila erecta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0114024
T43411_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
pAbp
M130_0.6
Drosophila melanogaster
GAAAAHV
RNAcompete
Ray et al.(2013)
RNCMPT00139
0.989
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0140392
RRM
4
74
LYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLLRNKPIR
FBpp0140392
RRM
92
161
VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVY
FBpp0140392
RRM
185
253
VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKS
FBpp0140392
RRM
289
358
LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLY
Links
Other
RRM
family RBPs
Other
Drosophila erecta
RBPs
74 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_kg.C_40353
Agaricus bisporus
estExt_fgenesh2_kg.C_40353
N
0.000
CC1G_01254
Coprinopsis cinerea
CC1G_01254
N
0.000
estExt_Genewise1Plus.C_41268
Heterobasidion annosum
estExt_Genewise1Plus.C_41268
N
0.000
fgenesh1_pg.C_scaffold_2000385
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_2000385
N
0.000
estExt_genemark.C_40631
Pleurotus ostreatus
estExt_genemark.C_40631
N
0.000
estExt_fgenesh3_pg.C_170041
Postia placenta
estExt_fgenesh3_pg.C_170041
N
0.000
estExt_fgenesh1_pm.C_10491
Schizophyllum commune
estExt_fgenesh1_pm.C_10491
N
0.000
estExt_fgenesh2_pg.C_40245
Serpula lacrymans
estExt_fgenesh2_pg.C_40245
N
0.000