CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cucsa.383370
(
Cucumis sativus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Cucsa.383370
T49663_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.383370.1
RRM
58
126
LFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQDKHTIDGKTVE
Cucsa.383370.1
RRM
163
232
IFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVE
Links
Other
RRM
family RBPs
Other
Cucumis sativus
RBPs
42 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002870277.1
Arabidopsis lyrata
fgenesh2_kg.7__2913__AT4G14300.1
N
0.745
AT4G14300
Arabidopsis thaliana
AT4G14300-TAIR-G
N
0.738
PK00513.1
Cannabis sativa
PK00513.1
N
0.842
PK25912.1
Cannabis sativa
PK25912.1
N
0.712
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.770
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.813
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.719
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.799
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.719
MDP0000286430
Malus x domestica
MDP0000286430
N
0.741
MDP0000130865
Malus x domestica
MDP0000130865
N
0.755
MDP0000173934
Malus x domestica
MDP0000173934
N
0.871
MDP0000204698
Malus x domestica
MDP0000204698
N
0.705
MDP0000217366
Malus x domestica
MDP0000217366
N
0.885
MDP0000320861
Malus x domestica
MDP0000320861
N
0.763
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.763
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.763
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.763
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.863
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.763
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.705
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.712
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.734
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.799
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.705
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.791
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.741
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.705
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.734
ppa005122m
Prunus persica
ppa005122m
N
0.705
ppa005309m
Prunus persica
ppa005309m
N
0.899
ppa004834m
Prunus persica
ppa004834m
N
0.705
ppa005979m
Prunus persica
ppa005979m
N
0.777
27613.m000635
Ricinus communis
27613.m000635
N
0.705
30008.m000830
Ricinus communis
30008.m000830
N
0.835
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.712
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.763
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.820
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.842
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.741
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.755
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.741