Ame_R019333 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R019333 T55661_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.914
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.914
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R019333 RRM 1 58
Ame_R019333 RRM 78 147

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.907
AGAP006656 Anopheles gambiae AGAP006656 N 0.750
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.812
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.914
MSI1 Canis familiaris ENSCAFG00000010283 I 0.894
MSI2 Canis familiaris ENSCAFG00000017418 I 0.764
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.736
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.914
MSI2 Cavia porcellus ENSCPOG00000008752 N 0.711
msi1 Danio rerio ENSDARG00000010710 I 0.857
msi2b Danio rerio ENSDARG00000032614 I 0.779
msi2a Danio rerio ENSDARG00000033901 I 0.764
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.714
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.893
MSI1 Echinops telfairi ENSETEG00000004756 I 0.984
LOC100053469 Equus caballus ENSECAG00000017526 I 0.969
LOC100070744 Equus caballus ENSECAG00000011435 I 0.773
MSI1 Felis catus ENSFCAG00000011007 I 0.992
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.829
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.771
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.883
MSI2 Homo sapiens ENSG00000153944 I 0.771
MSI1 Homo sapiens ENSG00000135097 D 0.914
MSI1 Loxodonta africana ENSLAFG00000009412 I 0.805
MSI1 Macaca mulatta ENSMMUG00000031527 I 1.000
MSI2 Macaca mulatta ENSMMUG00000002069 I 0.763
MSI1 Macropus eugenii ENSMEUG00000015759 N 0.734
ENSMGAG00000008742 Meleagris gallopavo ENSMGAG00000008742 I 0.789
MSI2 Microcebus murinus ENSMICG00000013598 I 0.771
Msi2 Mus musculus ENSMUSG00000069769 I 0.771
Msi1 Mus musculus ENSMUSG00000054256 I 0.948
nasonia_NCBI_hmm598804 Nasonia vitripennis nasonia_NCBI_hmm598804 N 0.729
MSI1 Ochotona princeps ENSOPRG00000016879 I 0.789
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.771
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.992
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.771
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.930
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.921
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.844
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.977
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.992
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.907
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.814
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.829
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.829
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.914
CBU92439 Xenopus laevis CBU92439 I 0.879
CBF67566 Xenopus laevis CBF67566 I 0.879
AAI69841 Xenopus laevis AAI69841 I 0.771
AAH84959 Xenopus laevis AAH84959 I 0.871
AAH82667 Xenopus laevis AAH82667 I 0.879
AAA50004 Xenopus laevis AAA50004 I 0.771
AAA49920 Xenopus laevis AAA49920 I 0.879
AAA49919 Xenopus laevis AAA49919 I 0.871
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.879