2118330B (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 2118330B T59411_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
2118330B RRM 34 104

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.775
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.761
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.831
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.859
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.000
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.732
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.873
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.803
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.718
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.718
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.718
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.746
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.859
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.704
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.000
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.761
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.761
Bm1_02935 Brugia malayi Bm1_02935 N 0.746
CBN14593 Caenorhabditis brenneri CBN14593 N 0.000
CBG22194 Caenorhabditis briggsae CBG22194 N 0.000
ncbp-2 Caenorhabditis elegans F26A3.2 N 0.000
CRE20447 Caenorhabditis remanei CRE20447 N 0.000
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.859
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.859
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.718
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.817
CAOG_06930 Capsaspora owczarzaki CAOG_06930 N 0.000
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.859
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.000
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.845
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.775
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.775
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.761
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.718
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.718
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.000
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.718
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.000
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.817
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.817
ncbp2 Danio rerio ENSDARG00000014898 N 0.859
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.775
GF16759 Drosophila ananassae FBgn0093780 N 0.831
GG22670 Drosophila erecta FBgn0114835 N 0.817
GH15101 Drosophila grimshawi FBgn0122576 N 0.831
Cbp20 Drosophila melanogaster FBgn0022943 N 0.803
GI23717 Drosophila mojavensis FBgn0146442 N 0.831
GL12592 Drosophila persimilis FBgn0150198 N 0.803
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.803
GM15280 Drosophila sechellia FBgn0170200 N 0.803
GD19204 Drosophila simulans FBgn0190709 N 0.803
GJ23276 Drosophila virilis FBgn0210378 N 0.831
GJ18756 Drosophila virilis FBgn0205908 N 0.789
GK11244 Drosophila willistoni FBgn0213255 N 0.817
GE25514 Drosophila yakuba FBgn0242580 N 0.803
NCBP2 Equus caballus ENSECAG00000016153 N 0.859
NCBP2L Equus caballus ENSECAG00000003478 N 0.732
NCBP2 Gallus gallus ENSGALG00000006843 N 0.859
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.915
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.859
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.000
91084 Helobdella robusta 91084 N 0.803
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.718
NCBP2 Homo sapiens ENSG00000114503 N 0.859
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.789
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.803
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.746
LOAG_03270 Loa loa LOAG_03270 N 0.761
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.789
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.775
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.845
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.859
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.873
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.859
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.000
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.000
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.915
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.859
Minc02990 Meloidogyne incognita Minc02990 N 0.000
Minc06129 Meloidogyne incognita Minc06129 N 0.000
NCBP2L Microcebus murinus ENSMICG00000016081 N 0.000
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.859
MCYG_04468 Microsporum canis MCYG_04468 N 0.718
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.718
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.873
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.873
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.845
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.845
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.000
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.859
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.704
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.859
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.817
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.775
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.746
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.718
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.859
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.859
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.873
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.000
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.859
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.859
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.859
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.718
PHUM535920 Pediculus humanus PHUM535920 N 0.789
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.704
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.704
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.718
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.000
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.000
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.859
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.000
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.859
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.845
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.718
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.859
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.000
SPOG_01217 Schizosaccharomyces cryophilus SPOG_01217 N 0.000
SOCG_01831 Schizosaccharomyces octosporus SOCG_01831 N 0.000
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.704
NCBP2 Sorex araneus ENSSARG00000014294 N 0.761
SB04G025800 Sorghum bicolor Sb04g025800 N 0.000
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.873
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.746
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.718
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.704
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.704
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.746
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.859
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.859
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.845
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.901
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.901
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.887
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.704
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.718
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.704
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.000
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.718
TERG_03424 Trichophyton rubrum TERG_03424 N 0.718
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.704
e_gw1.1.927.1 Trichoplax adhaerens e_gw1.1.927.1 N 0.704
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.732
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.859
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.859
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.845
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.000
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.761
AAH72902 Xenopus laevis AAH72902 N 0.972
CAA59259 Xenopus laevis CAA59259 N 1.000
P52299 Xenopus laevis P52299 N 0.972
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.915
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.000