LOC_Os11g40510 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os11g40510 T45157_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os11g40510.1 RRM 81 147
LOC_Os11g40510.1 RRM 166 236
LOC_Os11g40510.1 RRM 287 353
LOC_Os11g40510.2 RRM 43 109
LOC_Os11g40510.2 RRM 128 198
LOC_Os11g40510.2 RRM 249 315

Links

Other RRM family RBPs
Other Oryza sativa RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 1.000
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.941
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.888
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.868
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.786
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.786
PK20770.1 Cannabis sativa PK20770.1 I 0.786
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.786
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.786
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.782
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.782
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.782
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.782
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.782
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.782
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.782
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.782
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.782
29727.m000492 Ricinus communis 29727.m000492 I 0.777
mgf015309m Mimulus guttatus mgf015309m N 0.773
ppa006170m Prunus persica ppa006170m I 0.772
MDP0000871411 Malus x domestica MDP0000871411 I 0.771
29739.m003726 Ricinus communis 29739.m003726 I 0.771
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.771
ppa006419m Prunus persica ppa006419m I 0.771
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.767
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.766
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.762
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.762
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.762
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.762
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.761
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.757
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.757
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.757
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.757
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.757
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.756
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.756
MDP0000149711 Malus x domestica MDP0000149711 N 0.752
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.748
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.748
mgf001763m Mimulus guttatus mgf001763m I 0.746
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.746
mgf004534m Mimulus guttatus mgf004534m N 0.743
PK22818.1 Cannabis sativa PK22818.1 I 0.737
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.737
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.737
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.728
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.723
SB07G027050 Sorghum bicolor Sb07g027050 N 0.722
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.720
ppa006248m Prunus persica ppa006248m I 0.720
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.717
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.717
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.712
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.709
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.705
MDP0000147538 Malus x domestica MDP0000147538 N 0.701