LOC_Os08g40880 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os08g40880 T45119_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os08g40880.1 RRM 75 141
LOC_Os08g40880.1 RRM 160 230
LOC_Os08g40880.1 RRM 284 350

Links

Other RRM family RBPs
Other Oryza sativa RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB07G027050 Sorghum bicolor Sb07g027050 N 0.966
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.966
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.961
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.761
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.761
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.752
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.752
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.752
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.752
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.751
BGIOSIBCE028535 Oryza indica BGIOSIBCE028535 N 0.751
29739.m003726 Ricinus communis 29739.m003726 I 0.746
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.743
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.743
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.743
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.743
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.743
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.743
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.743
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.743
MDP0000871411 Malus x domestica MDP0000871411 I 0.741
mgf001763m Mimulus guttatus mgf001763m I 0.741
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.741
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.738
ppa006170m Prunus persica ppa006170m I 0.738
PK20770.1 Cannabis sativa PK20770.1 I 0.738
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.738
29727.m000492 Ricinus communis 29727.m000492 I 0.738
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.738
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.737
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.737
ppa006248m Prunus persica ppa006248m I 0.734
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.733
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.733
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.733
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.732
28226.m000878 Ricinus communis 28226.m000878 I 0.729
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.729
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.728
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.728
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.728
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.727
ppa006419m Prunus persica ppa006419m I 0.727
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.725
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.723
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.723
mgf015309m Mimulus guttatus mgf015309m N 0.720
mgf004534m Mimulus guttatus mgf004534m N 0.718
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.717
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.717
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.715
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.712
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.710
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.709
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.709
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.705
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.705
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.705
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.702