mgf015309m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf015309m T53746_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf015309m RRM 56 122
mgf015309m RRM 141 211
mgf015309m RRM 263 331

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29727.m000492 Ricinus communis 29727.m000492 I 0.908
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.903
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.903
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.903
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.903
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.903
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.903
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.903
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.903
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.899
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.899
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.899
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.899
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.899
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.894
ppa006170m Prunus persica ppa006170m I 0.894
PK20770.1 Cannabis sativa PK20770.1 I 0.894
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.889
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.889
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.884
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.884
mgf004534m Mimulus guttatus mgf004534m N 0.884
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.879
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.874
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.865
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.855
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.845
MDP0000149711 Malus x domestica MDP0000149711 N 0.845
MDP0000871411 Malus x domestica MDP0000871411 I 0.836
ppa006419m Prunus persica ppa006419m I 0.831
mgf001763m Mimulus guttatus mgf001763m I 0.826
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.821
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.821
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.816
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.812
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.807
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.807
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.807
PK22818.1 Cannabis sativa PK22818.1 I 0.802
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.797
29739.m003726 Ricinus communis 29739.m003726 I 0.797
MDP0000147538 Malus x domestica MDP0000147538 N 0.792
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.792
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.787
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.787
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.778
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.778
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.773
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.773
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.770
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.768
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.741
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.736
ppa006248m Prunus persica ppa006248m I 0.732
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.729
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.722
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.720
SB07G027050 Sorghum bicolor Sb07g027050 N 0.720
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.720
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.718
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.715
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.713
28226.m000878 Ricinus communis 28226.m000878 I 0.708
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.703