XM_002882822.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.3__1524__AT3G14100.1 T44516_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__1524__AT3G14100.1 RRM 63 129
fgenesh2_kg.3__1524__AT3G14100.1 RRM 148 218
fgenesh2_kg.3__1524__AT3G14100.1 RRM 269 336

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 1.000
29727.m000492 Ricinus communis 29727.m000492 I 0.879
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.874
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.874
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.874
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.874
ppa006170m Prunus persica ppa006170m I 0.874
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.874
PK20770.1 Cannabis sativa PK20770.1 I 0.874
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.869
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.869
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.869
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.869
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.869
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.869
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.869
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.869
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.869
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.869
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.864
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.864
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.859
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.859
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.859
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.854
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.854
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.850
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.840
mgf004534m Mimulus guttatus mgf004534m N 0.825
MDP0000149711 Malus x domestica MDP0000149711 N 0.825
mgf015309m Mimulus guttatus mgf015309m N 0.821
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.820
MDP0000871411 Malus x domestica MDP0000871411 I 0.820
mgf001763m Mimulus guttatus mgf001763m I 0.816
ppa006419m Prunus persica ppa006419m I 0.816
29739.m003726 Ricinus communis 29739.m003726 I 0.811
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.811
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.811
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.796
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.796
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.782
MDP0000147538 Malus x domestica MDP0000147538 N 0.777
PK22818.1 Cannabis sativa PK22818.1 I 0.777
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.772
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.767
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.757
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.757
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.757
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.752
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.752
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.745
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.739
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.733
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.729
ppa006248m Prunus persica ppa006248m I 0.721
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.716
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.709
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.709
SB07G027050 Sorghum bicolor Sb07g027050 N 0.709
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.704