MDP0000149711 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000149711 T57350_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000149711 RRM 58 124
MDP0000149711 RRM 143 213
MDP0000149711 RRM 264 324

Links

Other RRM family RBPs
Other Malus x domestica RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa006170m Prunus persica ppa006170m I 0.932
29727.m000492 Ricinus communis 29727.m000492 I 0.903
PK20770.1 Cannabis sativa PK20770.1 I 0.888
MDP0000147538 Malus x domestica MDP0000147538 N 0.885
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.883
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.883
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.883
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.883
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.883
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.883
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.883
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.883
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.883
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.883
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.883
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.883
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.879
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.874
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.869
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.869
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.864
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.864
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.864
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.864
mgf015309m Mimulus guttatus mgf015309m N 0.845
mgf001763m Mimulus guttatus mgf001763m I 0.840
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.840
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.835
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.825
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.825
mgf004534m Mimulus guttatus mgf004534m N 0.825
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.825
ppa006419m Prunus persica ppa006419m I 0.806
MDP0000871411 Malus x domestica MDP0000871411 I 0.806
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.791
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.791
29739.m003726 Ricinus communis 29739.m003726 I 0.786
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.786
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.782
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.777
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.767
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.767
PK22818.1 Cannabis sativa PK22818.1 I 0.767
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.757
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.757
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.757
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.752
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.752
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.745
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.743
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.738
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.735
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.718
ppa006248m Prunus persica ppa006248m I 0.716
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.715