LOC_Os07g42380 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os07g42380 T45087_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os07g42380.1 RRM 67 133
LOC_Os07g42380.1 RRM 152 222
LOC_Os07g42380.1 RRM 272 338

Links

Other RRM family RBPs
Other Oryza sativa RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE025600 Oryza indica BGIOSIBCE025600 N 0.922
BRADI1G21480 Brachypodium distachyon BRADI1G21480 N 0.898
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.834
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.824
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.816
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.816
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.816
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.816
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.806
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.806
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.806
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.806
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.806
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.806
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.806
PK20770.1 Cannabis sativa PK20770.1 I 0.806
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.806
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.806
29727.m000492 Ricinus communis 29727.m000492 I 0.801
MDP0000871411 Malus x domestica MDP0000871411 I 0.800
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.796
ppa006170m Prunus persica ppa006170m I 0.796
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.796
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.795
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.795
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.791
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.790
29739.m003726 Ricinus communis 29739.m003726 I 0.790
ppa006419m Prunus persica ppa006419m I 0.790
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.786
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.786
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.782
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.780
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.777
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.776
mgf001763m Mimulus guttatus mgf001763m I 0.771
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.771
mgf015309m Mimulus guttatus mgf015309m N 0.768
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.761
mgf004534m Mimulus guttatus mgf004534m N 0.757
BGIOSIBCE035181 Oryza indica BGIOSIBCE035181 N 0.756
Sb05g024850 Sorghum bicolor Sb05g024850 N 0.756
LOC_Os11g40510 Oryza sativa LOC_Os11g40510 N 0.756
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.752
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.752
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.752
PK22818.1 Cannabis sativa PK22818.1 I 0.751
SB07G027050 Sorghum bicolor Sb07g027050 N 0.751
ppa006248m Prunus persica ppa006248m I 0.749
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.748
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.746
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.744
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.744
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.741
cassava31599.valid.m1 Manihot esculenta cassava31599.valid.m1 N 0.738
MDP0000149711 Malus x domestica MDP0000149711 N 0.738
chr1.LjT36G06.30.nc Lotus japonicus chr1.LjT36G06.30.nc I 0.729
Medtr8g132790 Medicago truncatula Medtr8g132790 N 0.729
XM_002894431.1 Arabidopsis lyrata fgenesh2_kg.1__4492__AT1G54080.1 N 0.728
28226.m000878 Ricinus communis 28226.m000878 I 0.725
Medtr3g133100 Medicago truncatula Medtr3g133100 I 0.720
UBP1A Arabidopsis thaliana AT1G54080-TAIR-G N 0.718
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.710
B9NA29_POPTR Populus trichocarpa POPTR_0018s04060 I 0.705