Medtr8g132790 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr8g132790 T54614_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr8g132790.1 RRM 48 114
Medtr8g132790.1 RRM 133 196
Medtr8g132790.1 RRM 247 318
Medtr8g132790.2 RRM 48 114
Medtr8g132790.2 RRM 133 196
Medtr8g132790.2 RRM 247 318

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma13g17200.1 Glycine max Glyma13g17200.1 I 0.862
Glyma17g05530.1 Glycine max Glyma17g05530.1 I 0.854
GSVIVG00015040001 Vitis vinifera GSVIVG00015040001 I 0.838
ppa006419m Prunus persica ppa006419m I 0.833
MDP0000871411 Malus x domestica MDP0000871411 I 0.829
POPTR_0006s14150 Populus trichocarpa POPTR_0006s14150 I 0.814
cassava19001.valid.m1 Manihot esculenta cassava19001.valid.m1 I 0.814
mgf001763m Mimulus guttatus mgf001763m I 0.810
Cucsa.117430 Cucumis sativus Cucsa.117430 I 0.805
29739.m003726 Ricinus communis 29739.m003726 I 0.795
cassava129.valid.m1 Manihot esculenta cassava129.valid.m1 I 0.787
cassava128.valid.m1 Manihot esculenta cassava128.valid.m1 I 0.787
cassava2732.m1 Manihot esculenta cassava2732.m1 I 0.787
cassava2733.m1 Manihot esculenta cassava2733.m1 I 0.787
cassava2735.m1 Manihot esculenta cassava2735.m1 I 0.787
cassava2734.m1 Manihot esculenta cassava2734.m1 I 0.787
cassava127.valid.m1 Manihot esculenta cassava127.valid.m1 I 0.787
cassava2731.m1 Manihot esculenta cassava2731.m1 I 0.787
PK22818.1 Cannabis sativa PK22818.1 I 0.786
cassava34810.m1 Manihot esculenta cassava34810.m1 I 0.782
ppa006170m Prunus persica ppa006170m I 0.782
cassava31598.valid.m1 Manihot esculenta cassava31598.valid.m1 I 0.782
cassava31597.valid.m1 Manihot esculenta cassava31597.valid.m1 I 0.782
PK20770.1 Cannabis sativa PK20770.1 I 0.782
Cucsa.149440 Cucumis sativus Cucsa.149440 I 0.782
cassava31596.valid.m1 Manihot esculenta cassava31596.valid.m1 I 0.782
29727.m000492 Ricinus communis 29727.m000492 I 0.777
Glyma07g04640.1 Glycine max Glyma07g04640.1 I 0.777
B9N7F5_POPTR Populus trichocarpa POPTR_0001s16630 I 0.773
GSVIVG00016720001 Vitis vinifera GSVIVG00016720001 I 0.773
Cucsa.360070 Cucumis sativus Cucsa.360070 N 0.768
Glyma16g01230.1 Glycine max Glyma16g01230.1 I 0.763
Medtr8g025650 Medicago truncatula Medtr8g025650 I 0.763
B9GVQ6_POPTR Populus trichocarpa POPTR_0003s06680 I 0.763
mgf004534m Mimulus guttatus mgf004534m N 0.749
mgf015309m Mimulus guttatus mgf015309m N 0.741
AT3G14100 Arabidopsis thaliana AT3G14100-TAIR-G N 0.739
XM_002892901.1 Arabidopsis lyrata scaffold_101937.1 I 0.739
XM_002882822.1 Arabidopsis lyrata fgenesh2_kg.3__1524__AT3G14100.1 N 0.739
UBP1B Arabidopsis thaliana AT1G17370-TAIR-G I 0.735
MDP0000149711 Malus x domestica MDP0000149711 N 0.735
LOC_Os07g42380 Oryza sativa LOC_Os07g42380 N 0.729
PDK_20s1310721g001 Phoenix dactylifera PDK_20s1310721g001 N 0.724
SB07G027050 Sorghum bicolor Sb07g027050 N 0.714
MDP0000147538 Malus x domestica MDP0000147538 N 0.713
GRMZM2G166355 Zea mays GRMZM2G166355 N 0.710
ppa006248m Prunus persica ppa006248m I 0.710
LOC_Os08g40880 Oryza sativa LOC_Os08g40880 N 0.710
28226.m000878 Ricinus communis 28226.m000878 I 0.705
GSVIVG00035575001 Vitis vinifera GSVIVG00035575001 I 0.705
GRMZM2G090908 Zea mays GRMZM2G090908 N 0.700
BRADI3G40460 Brachypodium distachyon BRADI3G40460 I 0.700
BRADI4G13327 Brachypodium distachyon BRADI4G13327 N 0.700
gw1.13.802.1 Selaginella moellendorfii gw1.13.802.1 I 0.700