Medtr2g085380 (Medicago truncatula)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Medtr2g085380 T62452_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr2g085380.1 YTH 428 518
Medtr2g085380.2 YTH 321 411

Links

Other YTH family RBPs
Other Medicago truncatula RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.934
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.934
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.934
MDP0000171737 Malus x domestica MDP0000171737 N 0.923
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.923
ppa003664m Prunus persica ppa003664m N 0.923
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.912
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.901
MDP0000286471 Malus x domestica MDP0000286471 N 0.901
MDP0000231231 Malus x domestica MDP0000231231 N 0.901
29955.m001158 Ricinus communis 29955.m001158 N 0.890
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.879
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.879
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.868
PK23104.1 Cannabis sativa PK23104.1 N 0.857
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.857
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.846
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.846
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.846
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.835
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.824
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.824
SB03G031190 Sorghum bicolor Sb03g031190 N 0.824
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.824
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.824
MDP0000405927 Malus x domestica MDP0000405927 N 0.824
MDP0000617859 Malus x domestica MDP0000617859 N 0.824
MDP0000287088 Malus x domestica MDP0000287088 N 0.824
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.813
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.813
MDP0000248088 Malus x domestica MDP0000248088 N 0.813
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.813
MDP0000552419 Malus x domestica MDP0000552419 N 0.813
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.802
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.802
PK02315.1 Cannabis sativa PK02315.1 N 0.802
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.802
MDP0000488248 Malus x domestica MDP0000488248 N 0.802
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.802
MDP0000256033 Malus x domestica MDP0000256033 N 0.802
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.802
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.802
PK26094.1 Cannabis sativa PK26094.1 N 0.802
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.802
ppa002588m Prunus persica ppa002588m N 0.802
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.802
ppa002483m Prunus persica ppa002483m N 0.802
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.802
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
ppa018635m Prunus persica ppa018635m N 0.791
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.791
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.791
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.791
29889.m003364 Ricinus communis 29889.m003364 N 0.791
29765.m000746 Ricinus communis 29765.m000746 N 0.791
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.791
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.791
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.791
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.780
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.780
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
ppa003557m Prunus persica ppa003557m N 0.780
PK17832.1 Cannabis sativa PK17832.1 N 0.780
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.769
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.769
mgf019846m Mimulus guttatus mgf019846m N 0.769
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.769
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.769
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.769
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.769
mgf014829m Mimulus guttatus mgf014829m N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
mgf001716m Mimulus guttatus mgf001716m N 0.769
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.758
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
mgf015583m Mimulus guttatus mgf015583m N 0.758
mgf014143m Mimulus guttatus mgf014143m N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.758
29929.m004643 Ricinus communis 29929.m004643 N 0.758
PK01736.1 Cannabis sativa PK01736.1 N 0.758
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.758
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
MDP0000306387 Malus x domestica MDP0000306387 N 0.758
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.747
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.747
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.747
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.736
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.736
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.736
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.736
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.725
PK05579.1 Cannabis sativa PK05579.1 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
mgf019821m Mimulus guttatus mgf019821m N 0.725
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.725
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
ppa002677m Prunus persica ppa002677m N 0.714
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.703
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.703
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.703