BGIOSIBCE036312 (Oryza indica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 BGIOSIBCE036312 T01973_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE036312 CCCH ZF 68 93
BGIOSIBCE036312 CCCH ZF 113 138
BGIOSIBCE036312 CCCH ZF 158 178
BGIOSIBCE036312 CCCH ZF 260 286
BGIOSIBCE036312 CCCH ZF 306 332

Links

Other CCCH ZF family RBPs
Other Oryza indica RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30128.m009030 Ricinus communis 30128.m009030 N 0.851
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.799
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.797
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.754
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.799
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.947
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.910
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.822
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.822
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.851
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.836
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.799
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.789
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.858
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.851
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.836
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.828
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.821
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.865
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.828
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.895
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.769
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.807
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.932
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.955
MDP0000178517 Malus x domestica MDP0000178517 N 0.767
MDP0000577111 Malus x domestica MDP0000577111 N 0.709
MDP0000665604 Malus x domestica MDP0000665604 N 0.709
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.806
mgf007299m Mimulus guttatus mgf007299m N 0.793
PK23881.1 Cannabis sativa PK23881.1 N 0.851
ppa005813m Prunus persica ppa005813m N 0.866
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.828
SB05G013190 Sorghum bicolor Sb05g013190 N 0.887