CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIOSIBCE036312
(
Oryza indica
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
BGIOSIBCE036312
T01973_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSIBCE036312
CCCH ZF
68
93
GEPDCSYYMRTGLCRFGMTCKFNHPP
BGIOSIBCE036312
CCCH ZF
113
138
GQPECQYYLKTGTCKFGATCKFHHPR
BGIOSIBCE036312
CCCH ZF
158
178
PNEKECAYYLRTGQCKFASTC
BGIOSIBCE036312
CCCH ZF
260
286
PDQPECQFYMKTGDCKFGAVCKFHHPK
BGIOSIBCE036312
CCCH ZF
306
332
PGEPVCTFYSRYGICKFGPNCKFDHPM
Links
Other
CCCH ZF
family RBPs
Other
Oryza indica
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30128.m009030
Ricinus communis
30128.m009030
N
0.851
ZFN1
Arabidopsis thaliana
AT3G02830-TAIR-G
N
0.799
ZFN3
Arabidopsis thaliana
AT5G16540-TAIR-G
N
0.797
BGIOSIBCE004747
Oryza indica
BGIOSIBCE004747
N
0.754
BRADI2G58770
Brachypodium distachyon
BRADI2G58770
N
0.799
BRADI4G08050
Brachypodium distachyon
BRADI4G08050
N
0.947
BRADI4G19010
Brachypodium distachyon
BRADI4G19010
N
0.910
cassava12889.valid.m1
Manihot esculenta
cassava12889.valid.m1
N
0.822
cassava12890.valid.m1
Manihot esculenta
cassava12890.valid.m1
N
0.822
cassava17662.valid.m1
Manihot esculenta
cassava17662.valid.m1
N
0.851
chr1.CM1413.200.nd
Lotus japonicus
chr1.CM1413.200.nd
N
0.836
XM_002882207.1
Arabidopsis lyrata
fgenesh2_kg.3__226__AT3G02830.1
N
0.799
XM_002871677.1
Arabidopsis lyrata
fgenesh2_kg.6__1644__AT5G16540.1
N
0.789
Glyma09g38650.1
Glycine max
Glyma09g38650.1
N
0.858
Glyma10g31370.1
Glycine max
Glyma10g31370.1
N
0.851
Glyma18g47660.1
Glycine max
Glyma18g47660.1
N
0.836
Glyma20g36140.1
Glycine max
Glyma20g36140.1
N
0.828
GRMZM2G087032
Zea mays
GRMZM2G087032
N
0.821
GRMZM2G100794
Zea mays
GRMZM2G100794
N
0.865
GRMZM2G107491
Zea mays
GRMZM2G107491
N
0.828
GRMZM2G146514
Zea mays
GRMZM2G146514
N
0.895
gw1.102.25.1
Physcomitrella patens
gw1.102.25.1
N
0.769
LOC_Os01g68860
Oryza sativa
LOC_Os01g68860
N
0.807
LOC_Os11g28270
Oryza sativa
LOC_Os11g28270
N
0.932
LOC_Os12g21700
Oryza sativa
LOC_Os12g21700
N
0.955
MDP0000178517
Malus x domestica
MDP0000178517
N
0.767
MDP0000577111
Malus x domestica
MDP0000577111
N
0.709
MDP0000665604
Malus x domestica
MDP0000665604
N
0.709
Medtr7g089530
Medicago truncatula
Medtr7g089530
N
0.806
mgf007299m
Mimulus guttatus
mgf007299m
N
0.793
PK23881.1
Cannabis sativa
PK23881.1
N
0.851
ppa005813m
Prunus persica
ppa005813m
N
0.866
Sb03g043810
Sorghum bicolor
Sb03g043810
N
0.828
SB05G013190
Sorghum bicolor
Sb05g013190
N
0.887