Sb03g043810 (Sorghum bicolor)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Sb03g043810 T04111_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g043810.1 CCCH ZF 70 96
Sb03g043810.1 CCCH ZF 116 141
Sb03g043810.1 CCCH ZF 161 187
Sb03g043810.1 CCCH ZF 313 339
Sb03g043810.1 CCCH ZF 359 385
Sb03g043810.2 CCCH ZF 10 35
Sb03g043810.2 CCCH ZF 55 81
Sb03g043810.2 CCCH ZF 207 233
Sb03g043810.2 CCCH ZF 253 279

Links

Other CCCH ZF family RBPs
Other Sorghum bicolor RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29647.m002009 Ricinus communis 29647.m002009 N 0.000
29726.m004014 Ricinus communis 29726.m004014 N 0.000
30128.m009030 Ricinus communis 30128.m009030 N 0.836
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.000
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.000
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.000
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.000
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.800
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.800
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.836
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.000
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.731
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.000
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.836
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.000
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.000
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.000
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.000
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.858
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.000
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.836
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.000
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.828
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.828
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.000
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.000
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.000
GRMZM2G475017 Zea mays GRMZM2G475017 N 0.000
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.000
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.000
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.776
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.000
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.000
MDP0000207283 Malus x domestica MDP0000207283 N 0.000
MDP0000319251 Malus x domestica MDP0000319251 N 0.000
MDP0000535412 Malus x domestica MDP0000535412 N 0.000
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.000
mgf001793m Mimulus guttatus mgf001793m N 0.000
mgf002685m Mimulus guttatus mgf002685m N 0.000
mgf004851m Mimulus guttatus mgf004851m N 0.000
mgf008934m Mimulus guttatus mgf008934m N 0.000
mgf010716m Mimulus guttatus mgf010716m N 0.000
mgf026218m Mimulus guttatus mgf026218m N 0.000
PK29685.1 Cannabis sativa PK29685.1 N 0.000
ppa005229m Prunus persica ppa005229m N 0.000
ppa005813m Prunus persica ppa005813m N 0.836
SB03G009920 Sorghum bicolor Sb03g009920 N 0.000
SB03G009930 Sorghum bicolor Sb03g009930 N 0.000
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.000