CPEB2 (Sorex araneus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSARG00000010559 T41349_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.872
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.826
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.805
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000009533 RRM 169 223
ENSSARP00000009533 RRM 266 330

Links

Other RRM family RBPs
Other Sorex araneus RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL012065 Aedes aegypti AAEL012065 I 0.813
ADH10187 Xenopus laevis ADH10187 I 0.839
AGAP002296 Anopheles gambiae AGAP002296 I 0.737
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.812
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.860
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.901
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.839
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.818
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.840
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.860
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.893
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.839
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.839
CPEB3 Bos taurus ENSBTAG00000015450 I 0.860
CPEB2 Bos taurus ENSBTAG00000019847 I 0.901
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.860
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.901
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.833
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.854
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.901
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.778
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.860
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.901
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.839
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.901
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.839
CPEB2 Danio rerio ENSDARG00000052604 I 0.934
cpeb3 Danio rerio ENSDARG00000060103 I 0.847
CPEB4 Danio rerio ENSDARG00000060495 I 0.832
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.901
CPEB3 Equus caballus ENSECAG00000000077 I 0.854
CPEB2 Equus caballus ENSECAG00000008722 I 0.901
LOC100058918 Equus caballus ENSECAG00000016921 I 0.839
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.839
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.853
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.906
CPEB3 Homo sapiens ENSG00000107864 I 0.860
CPEB4 Homo sapiens ENSG00000113742 D 0.839
CPEB2 Homo sapiens ENSG00000137449 D 0.967
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.825
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.842
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.825
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.832
CPEB3 Gallus gallus ENSGALG00000006912 I 0.860
CPEB4 Gallus gallus ENSGALG00000014074 I 0.827
CPEB2 Gallus gallus ENSGALG00000014516 I 0.901
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.901
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.839
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.860
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.901
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.839
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.860
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.901
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.853
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.827
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.901
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.860
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.860
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.839
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.901
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.860
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.832
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.901
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.839
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.860
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.839
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.860
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.901
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.893
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.827
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.854
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.901
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.839
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.860
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.839
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.901
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.839
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.846
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.832
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.825
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.856
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.839
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.765
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.860
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.901
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.839
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.860
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.901
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.839
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.847
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.855
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.839
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.842
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.860
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.839
CPEB3 Sorex araneus ENSSARG00000001994 I 0.854
CPEB4 Sorex araneus ENSSARG00000013389 I 0.825
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.901
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.860
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.839
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.839
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.860
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.839
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.860
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.901
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.826
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.825
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.856
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.832
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.825
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.833
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.848
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.839
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.901
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.730
CPEB2 Vicugna pacos ENSVPAG00000006185 I 1.000
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.752
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.860
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.833
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.780
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.795
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.809
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.818
GF10140 Drosophila ananassae FBgn0087181 I 0.826
GG15051 Drosophila erecta FBgn0107305 I 0.818
GH16131 Drosophila grimshawi FBgn0123602 I 0.824
GI12400 Drosophila mojavensis FBgn0135157 I 0.818
GL20808 Drosophila persimilis FBgn0158403 I 0.818
GJ12289 Drosophila virilis FBgn0199538 I 0.818
GK17460 Drosophila willistoni FBgn0219459 I 0.818
GE21274 Drosophila yakuba FBgn0238542 I 0.818
orb2 Drosophila melanogaster FBgn0262573 D 0.818
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.871
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.737
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.865
ISCW010113 Ixodes scapularis ISCW010113 I 0.842
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.796
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.770
PHUM335520 Pediculus humanus PHUM335520 I 0.817
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.842
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.725
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.842