e_gw.6.76.1 (Nematostella vectensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw.6.76.1 T50243_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.879
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.841
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.839
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.6.76.1 RRM 16 81
e_gw.6.76.1 RRM 124 188

Links

Other RRM family RBPs
Other Nematostella vectensis RBPs

144 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.886
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.879
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.879
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.879
CPEB2 Equus caballus ENSECAG00000008722 I 0.879
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.879
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.879
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.879
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.879
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.879
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.879
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.879
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.879
CPEB2 Gallus gallus ENSGALG00000014516 I 0.879
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.879
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.879
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.879
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.879
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.879
CPEB2 Homo sapiens ENSG00000137449 D 0.879
CPEB2 Bos taurus ENSBTAG00000019847 I 0.879
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.879
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.879
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.879
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.879
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.879
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.879
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.879
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.879
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.879
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.871
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.865
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.863
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.857
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.857
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.856
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.853
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.853
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.853
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.853
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.853
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.853
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.853
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.853
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.853
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.853
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.853
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.853
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.853
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.853
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.853
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.853
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.853
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.853
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.853
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.853
CPEB4 Danio rerio ENSDARG00000060495 I 0.853
LOC100058918 Equus caballus ENSECAG00000016921 I 0.853
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.853
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.853
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.853
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.853
ADH10187 Xenopus laevis ADH10187 I 0.853
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.853
CPEB4 Homo sapiens ENSG00000113742 D 0.853
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.853
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.853
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.853
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.850
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.848
orb2 Drosophila melanogaster FBgn0262573 D 0.847
GJ12289 Drosophila virilis FBgn0199538 I 0.847
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.847
PHUM335520 Pediculus humanus PHUM335520 I 0.847
GE21274 Drosophila yakuba FBgn0238542 I 0.847
GF10140 Drosophila ananassae FBgn0087181 I 0.847
GG15051 Drosophila erecta FBgn0107305 I 0.847
GI12400 Drosophila mojavensis FBgn0135157 I 0.847
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.847
GK17460 Drosophila willistoni FBgn0219459 I 0.847
GL20808 Drosophila persimilis FBgn0158403 I 0.847
GH16131 Drosophila grimshawi FBgn0123602 I 0.847
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.847
CPEB3 Bos taurus ENSBTAG00000015450 I 0.847
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.847
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.847
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.847
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.847
CPEB3 Gallus gallus ENSGALG00000006912 I 0.847
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.847
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.847
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.847
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.847
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.847
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.847
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.847
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.847
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.847
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.847
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.847
CPEB3 Homo sapiens ENSG00000107864 I 0.847
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.847
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.847
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.847
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.847
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.847
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.847
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.846
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.846
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.841
CPEB4 Gallus gallus ENSGALG00000014074 I 0.841
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.841
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.841
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.841
CPEB3 Equus caballus ENSECAG00000000077 I 0.841
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.841
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.841
CPEB3 Sorex araneus ENSSARG00000001994 I 0.841
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.840
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.839
CPEB4 Sorex araneus ENSSARG00000013389 I 0.838
ISCW010113 Ixodes scapularis ISCW010113 I 0.835
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.833
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.833
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.833
cpeb3 Danio rerio ENSDARG00000060103 I 0.833
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.833
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.832
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.832
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.825
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.824
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.824
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.809
AGAP002296 Anopheles gambiae AGAP002296 I 0.805
CPEB2 Sorex araneus ENSSARG00000010559 I 0.780
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.780
CPEB2 Danio rerio ENSDARG00000052604 I 0.774
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.759
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.752
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.745
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.744
111676 Helobdella robusta 111676 I 0.725
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.723
AAEL012065 Aedes aegypti AAEL012065 I 0.709