CPEB3 (Vicugna pacos)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSVPAG00000002144 T42711_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.745
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.730
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000001980 RRM 445 481
ENSVPAP00000001980 RRM 553 622

Links

Other RRM family RBPs
Other Vicugna pacos RBPs

136 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ADH10187 Xenopus laevis ADH10187 I 0.757
AGAP002296 Anopheles gambiae AGAP002296 I 0.000
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.701
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.774
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.737
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.757
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.715
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.721
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.774
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.737
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.757
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.757
CPEB3 Bos taurus ENSBTAG00000015450 I 0.774
CPEB2 Bos taurus ENSBTAG00000019847 I 0.737
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.774
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.737
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.752
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.768
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.737
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.000
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.774
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.737
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.757
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.737
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.757
cpeb3 Danio rerio ENSDARG00000060103 I 0.754
CPEB4 Danio rerio ENSDARG00000060495 I 0.750
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.737
CPEB3 Equus caballus ENSECAG00000000077 I 0.768
CPEB2 Equus caballus ENSECAG00000008722 I 0.737
LOC100058918 Equus caballus ENSECAG00000016921 I 0.757
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.757
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.774
CPEB3 Homo sapiens ENSG00000107864 I 0.774
CPEB4 Homo sapiens ENSG00000113742 D 0.757
CPEB2 Homo sapiens ENSG00000137449 D 0.737
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.752
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.715
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.750
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.750
CPEB3 Gallus gallus ENSGALG00000006912 I 0.774
CPEB4 Gallus gallus ENSGALG00000014074 I 0.746
CPEB2 Gallus gallus ENSGALG00000014516 I 0.737
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.737
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.757
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.774
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.737
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.757
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.774
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.737
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.774
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.746
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.737
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.774
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.774
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 1.000
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.757
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.737
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.774
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.750
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.737
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.757
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.774
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.757
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.774
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.737
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.737
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.746
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.768
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.737
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.757
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.774
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.757
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.737
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.757
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.752
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.750
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.750
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.715
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.757
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.000
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.774
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.737
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.757
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.774
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.737
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.757
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.000
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.713
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.757
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.706
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.774
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.757
CPEB3 Sorex araneus ENSSARG00000001994 I 0.768
CPEB4 Sorex araneus ENSSARG00000013389 I 0.743
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.737
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.774
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.752
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.757
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.774
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.757
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.774
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.737
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.754
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.750
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.715
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.750
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.750
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.754
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.715
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.757
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.737
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.000
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.000
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.774
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.000
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.000
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.758
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.716
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.713
GF10140 Drosophila ananassae FBgn0087181 I 0.713
GG15051 Drosophila erecta FBgn0107305 I 0.713
GH16131 Drosophila grimshawi FBgn0123602 I 0.713
GI12400 Drosophila mojavensis FBgn0135157 I 0.713
GL20808 Drosophila persimilis FBgn0158403 I 0.713
GJ12289 Drosophila virilis FBgn0199538 I 0.713
GK17460 Drosophila willistoni FBgn0219459 I 0.713
GE21274 Drosophila yakuba FBgn0238542 I 0.713
orb2 Drosophila melanogaster FBgn0262573 D 0.713
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.730
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.000
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.737
ISCW010113 Ixodes scapularis ISCW010113 I 0.710
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.745
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.000
PHUM335520 Pediculus humanus PHUM335520 I 0.706
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.000
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.710
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.713
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.710