CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GI22065
(
Drosophila mojavensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0144794
T43646_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.992
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.992
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0171282
RRM
6
68
VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVV
FBpp0171282
RRM
121
186
LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRVH
Links
Other
RRM
family RBPs
Other
Drosophila mojavensis
RBPs
129 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
72885
Helobdella robusta
72885
N
0.000
AAEL003407
Aedes aegypti
AAEL003407
I
0.000
AAF81070
Xenopus laevis
AAF81070
I
0.000
AAH44956
Xenopus laevis
AAH44956
I
0.000
AAH72792
Xenopus laevis
AAH72792
I
0.000
AAH72812
Xenopus laevis
AAH72812
I
0.000
AAP42281
Xenopus laevis
AAP42281
I
0.000
amel4_ncbi_hmm7752
Apis mellifera
amel4_ncbi_hmm7752
I
0.000
BGIBMGA002685
Bombyx mori
BGIBMGA002685
I
0.000
CAB96420
Xenopus laevis
CAB96420
I
0.000
CBG14309
Caenorhabditis briggsae
CBG14309
I
0.000
CBN01626
Caenorhabditis brenneri
CBN01626
I
0.000
CJA06291
Caenorhabditis japonica
CJA06291
I
0.000
CPIJ008248
Culex quinquefasciatus
CPIJ008248
I
0.000
CpipJ_CPIJ008248
Culex pipiens
CpipJ_CPIJ008248
I
0.000
CRE00857
Caenorhabditis remanei
CRE00857
I
0.000
RBM24
Anolis carolinensis
ENSACAG00000003962
I
0.000
RBM38
Anolis carolinensis
ENSACAG00000016238
N
0.000
RBM38
Bos taurus
ENSBTAG00000008105
I
0.000
RBM24
Canis familiaris
ENSCAFG00000009942
N
0.000
RBM24
Callithrix jacchus
ENSCJAG00000006579
I
0.000
LOC100404144
Callithrix jacchus
ENSCJAG00000019139
I
0.000
ENSCJAG00000021904
Callithrix jacchus
ENSCJAG00000021904
N
0.000
RBM24
Cavia porcellus
ENSCPOG00000008838
I
0.000
RBM38
Cavia porcellus
ENSCPOG00000012781
I
0.000
ENSCSAVG00000001132
Ciona savignyi
ENSCSAVG00000001132
I
0.000
rbm24b
Danio rerio
ENSDARG00000031809
I
0.000
ENSDARG00000058818
Danio rerio
ENSDARG00000058818
D
0.000
ENSDARG00000075681
Danio rerio
ENSDARG00000075681
I
0.000
rbm24a
Danio rerio
ENSDARG00000078293
I
0.000
RBM38
Erinaceus europaeus
ENSEEUG00000013489
I
0.000
RBM24
Homo sapiens
ENSG00000112183
D
0.000
RBM38
Homo sapiens
ENSG00000132819
I
0.000
RBM24
Gasterosteus aculeatus
ENSGACG00000005383
I
0.000
RBM24
Gasterosteus aculeatus
ENSGACG00000008472
I
0.000
RBM38
Gasterosteus aculeatus
ENSGACG00000009873
N
0.000
RBM38
Gasterosteus aculeatus
ENSGACG00000015224
I
0.000
RBM24
Gallus gallus
ENSGALG00000012712
I
0.000
RBM24
Gorilla gorilla
ENSGGOG00000013628
I
0.000
RBM24
Loxodonta africana
ENSLAFG00000000116
I
0.000
RBM38
Macropus eugenii
ENSMEUG00000005475
N
0.000
RBM24
Microcebus murinus
ENSMICG00000011880
I
0.000
RBM24
Myotis lucifugus
ENSMLUG00000016451
I
0.000
RBM38
Macaca mulatta
ENSMMUG00000031391
I
0.000
RBM24
Monodelphis domestica
ENSMODG00000010899
I
0.000
RBM38
Monodelphis domestica
ENSMODG00000016458
I
0.000
Rbm24
Mus musculus
ENSMUSG00000038132
I
0.000
RBM38
Ornithorhynchus anatinus
ENSOANG00000009259
I
0.000
RBM24
Ornithorhynchus anatinus
ENSOANG00000011865
I
0.000
RBM24
Ochotona princeps
ENSOPRG00000012150
I
0.000
RBM24
Oryzias latipes
ENSORLG00000007916
I
0.000
RBM38
Oryzias latipes
ENSORLG00000012154
I
0.000
RBM24
Oryzias latipes
ENSORLG00000012546
I
0.000
RBM24
Procavia capensis
ENSPCAG00000015152
I
0.000
ENSPPYG00000016256
Pongo pygmaeus
ENSPPYG00000016256
I
0.000
RBM38
Pan troglodytes
ENSPTRG00000013661
I
0.000
RBM24
Pan troglodytes
ENSPTRG00000017749
I
0.000
RBM24
Pteropus vampyrus
ENSPVAG00000004954
I
0.000
D3ZGE9_RAT
Rattus norvegicus
ENSRNOG00000006420
I
0.000
Rbm24
Rattus norvegicus
ENSRNOG00000016925
I
0.000
RBM24
Sus scrofa
ENSSSCG00000001066
I
0.000
RBM38
Sus scrofa
ENSSSCG00000007504
I
0.000
RBM38
Tupaia belangeri
ENSTBEG00000001689
I
0.000
RBM24
Taeniopygia guttata
ENSTGUG00000005984
I
0.000
RBM38
Tetraodon nigroviridis
ENSTNIG00000007093
I
0.000
ENSTNIG00000009181
Tetraodon nigroviridis
ENSTNIG00000009181
D
0.000
RBM24
Tetraodon nigroviridis
ENSTNIG00000018417
I
0.000
RBM38
Takifugu rubripes
ENSTRUG00000004291
I
0.000
RBM24
Takifugu rubripes
ENSTRUG00000010089
I
0.000
RBM38
Takifugu rubripes
ENSTRUG00000010969
I
0.000
RBM24
Takifugu rubripes
ENSTRUG00000014826
I
0.000
RBM24
Tarsius syrichta
ENSTSYG00000001242
N
0.000
RBM24
Tursiops truncatus
ENSTTRG00000000393
I
0.000
rbm38
Xenopus tropicalis
ENSXETG00000011268
I
0.000
rbm24
Xenopus tropicalis
ENSXETG00000024618
I
0.000
estExt_Genewise1.C_490050
Capitella teleta
estExt_Genewise1.C_490050
I
0.000
e_gw.482.10.1
Branchiostoma floridae
e_gw.482.10.1
I
0.000
e_gw.63.59.1
Branchiostoma floridae
e_gw.63.59.1
I
0.000
gw1.13430.3.1
Daphnia pulex
gw1.13430.3.1
I
0.000
gw1.63.188.1
Daphnia pulex
gw1.63.188.1
I
0.000
gw1.7.318.1
Trichoplax adhaerens
gw1.7.318.1
I
0.000
gw1.9.44.1
Lottia gigantea
gw1.9.44.1
I
0.000
LOAG_12553
Loa loa
LOAG_12553
I
0.000
Minc01542
Meloidogyne incognita
Minc01542
I
0.000
Minc02018
Meloidogyne incognita
Minc02018
I
0.000
Minc02019
Meloidogyne incognita
Minc02019
I
0.000
nasonia_NCBI_hmm626184
Nasonia vitripennis
nasonia_NCBI_hmm626184
I
0.000
Q6GQD3
Xenopus laevis
Q6GQD3
I
0.000
Q7T3I7
Xenopus laevis
Q7T3I7
I
0.000
Q9I8B3
Xenopus laevis
Q9I8B3
I
0.000
Smp_075850
Schistosoma mansoni
Smp_075850
I
0.000
SNAPOd2T00023369001
Oikopleura dioica
SNAPOd2T00023369001
I
0.000
sup-12
Caenorhabditis elegans
T22B2.4
D
0.000
WUBG_00807
Wuchereria bancrofti
WUBG_00807
I
0.000
XP_001178734.1
Strongylocentrotus purpuratus
XP_001178734.1
I
0.000
XP_789333.2
Strongylocentrotus purpuratus
XP_789333.2
I
0.000