GSVIVG00038633001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00038633001 T44804_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00038633001 RRM 178 245
GSVIVT00038633001 RRM 275 343

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29485.m000140 Ricinus communis 29485.m000140 N 0.861
29650.m000268 Ricinus communis 29650.m000268 N 0.788
30068.m002593 Ricinus communis 30068.m002593 N 0.912
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.803
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.854
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.788
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.788
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.796
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.847
CID13 Arabidopsis thaliana AT5G24440-TAIR-G N 0.715
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.774
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.745
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.905
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.788
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.788
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.781
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.883
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.818
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.861
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.861
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.854
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.854
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.854
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.861
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.861
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.912
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.752
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.781
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.715
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.725
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.861
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.942
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.942
XM_002874153.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001957 N 0.715
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.854
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.796
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.796
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.869
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.898
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.869
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.876
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.883
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.818
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.810
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.745
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.752
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.898
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.745
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.730
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.912
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.810
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.825
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.927
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.898
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.898
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.723
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.796
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.774
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.759
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.905
MDP0000155814 Malus x domestica MDP0000155814 N 0.702
MDP0000223003 Malus x domestica MDP0000223003 N 0.708
MDP0000233630 Malus x domestica MDP0000233630 N 0.869
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.869
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.854
mgf005336m Mimulus guttatus mgf005336m N 0.723
mgf012896m Mimulus guttatus mgf012896m N 0.920
mgf013366m Mimulus guttatus mgf013366m N 0.912
mgf014445m Mimulus guttatus mgf014445m N 0.730
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.774
PK04894.1 Cannabis sativa PK04894.1 N 0.905
PK12463.1 Cannabis sativa PK12463.1 N 0.920
PK28889.1 Cannabis sativa PK28889.1 N 0.810
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.752
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.737
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.752
ppa006808m Prunus persica ppa006808m N 0.898
ppa009298m Prunus persica ppa009298m N 0.832
SB03G002180 Sorghum bicolor Sb03g002180 N 0.752
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.766
SB07G001560 Sorghum bicolor Sb07g001560 N 0.912
SB10G021290 Sorghum bicolor Sb10g021290 N 0.745