SNAPOd2T00005918001 (Oikopleura dioica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SNAPOd2T00005918001 T48357_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.811
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.802
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00005918001 RRM 462 523
SNAPOd2T00005918001 RRM 570 631

Links

Other RRM family RBPs
Other Oikopleura dioica RBPs

139 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
111676 Helobdella robusta 111676 I 0.750
69117 Helobdella robusta 69117 N 0.748
79994 Helobdella robusta 79994 I 0.731
ADH10187 Xenopus laevis ADH10187 I 0.768
AGAP002296 Anopheles gambiae AGAP002296 I 0.781
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.769
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.768
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.797
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.768
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.776
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.788
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.768
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.797
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.768
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.768
CPEB3 Bos taurus ENSBTAG00000015450 I 0.768
CPEB2 Bos taurus ENSBTAG00000019847 I 0.797
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.768
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.797
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.763
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.763
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.797
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.812
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.768
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.797
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.768
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.797
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.768
cpeb3 Danio rerio ENSDARG00000060103 I 0.748
CPEB4 Danio rerio ENSDARG00000060495 I 0.761
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.797
CPEB3 Equus caballus ENSECAG00000000077 I 0.763
CPEB2 Equus caballus ENSECAG00000008722 I 0.797
LOC100058918 Equus caballus ENSECAG00000016921 I 0.768
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.768
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.768
CPEB3 Homo sapiens ENSG00000107864 I 0.768
CPEB4 Homo sapiens ENSG00000113742 D 0.768
CPEB2 Homo sapiens ENSG00000137449 D 0.797
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.755
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.774
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.761
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.761
CPEB3 Gallus gallus ENSGALG00000006912 I 0.768
CPEB4 Gallus gallus ENSGALG00000014074 I 0.757
CPEB2 Gallus gallus ENSGALG00000014516 I 0.797
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.797
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.768
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.768
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.797
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.768
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.768
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.797
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.768
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.757
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.797
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.768
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.768
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.768
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.797
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.768
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.761
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.797
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.768
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.768
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.768
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.768
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.797
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.797
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.757
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.763
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.797
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.768
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.768
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.768
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.797
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.768
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.761
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.761
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.761
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.769
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.768
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.768
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.797
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.768
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.768
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.797
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.768
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.792
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.780
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.768
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.768
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.768
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.768
CPEB3 Sorex araneus ENSSARG00000001994 I 0.763
CPEB4 Sorex araneus ENSSARG00000013389 I 0.754
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.797
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.768
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.763
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.768
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.768
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.768
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.768
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.797
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.743
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.761
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.769
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.761
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.761
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.743
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.769
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.768
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.797
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.710
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.768
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.739
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.744
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.792
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.785
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.774
GF10140 Drosophila ananassae FBgn0087181 I 0.774
GG15051 Drosophila erecta FBgn0107305 I 0.774
GH16131 Drosophila grimshawi FBgn0123602 I 0.780
GI12400 Drosophila mojavensis FBgn0135157 I 0.774
GL20808 Drosophila persimilis FBgn0158403 I 0.774
GJ12289 Drosophila virilis FBgn0199538 I 0.774
GK17460 Drosophila willistoni FBgn0219459 I 0.774
GE21274 Drosophila yakuba FBgn0238542 I 0.774
orb2 Drosophila melanogaster FBgn0262573 D 0.774
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.791
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.785
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.785
ISCW010113 Ixodes scapularis ISCW010113 I 0.770
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.754
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.774
PHUM335520 Pediculus humanus PHUM335520 I 0.788
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.785
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.756
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.785