111676 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 111676 T48488_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.816
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.801
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
111676 RRM 81 142
111676 RRM 189 258

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.804
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.804
CPEB3 Bos taurus ENSBTAG00000015450 I 0.804
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.804
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.804
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.804
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.804
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.804
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.804
CPEB3 Homo sapiens ENSG00000107864 I 0.804
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.804
CPEB3 Gallus gallus ENSGALG00000006912 I 0.804
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.804
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.804
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.804
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.804
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.804
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.804
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.804
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.804
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.804
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.804
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.804
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.804
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.799
CPEB3 Equus caballus ENSECAG00000000077 I 0.799
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.799
CPEB3 Sorex araneus ENSSARG00000001994 I 0.799
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.797
cpeb3 Danio rerio ENSDARG00000060103 I 0.791
CPEB4 Homo sapiens ENSG00000113742 D 0.790
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.790
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.790
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.790
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.790
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.790
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.790
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.790
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.790
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.790
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.790
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.790
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.790
LOC100058918 Equus caballus ENSECAG00000016921 I 0.790
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.790
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.790
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.790
ADH10187 Xenopus laevis ADH10187 I 0.790
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.790
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.790
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.790
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.790
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.790
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.790
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.790
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.790
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.790
AGAP002296 Anopheles gambiae AGAP002296 I 0.789
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.786
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.786
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.785
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.784
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.784
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.784
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.784
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.783
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.783
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.783
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.783
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.783
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.783
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.783
CPEB4 Danio rerio ENSDARG00000060495 I 0.783
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.783
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.779
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.779
CPEB4 Gallus gallus ENSGALG00000014074 I 0.779
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.778
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.777
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.775
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.775
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.775
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.775
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.775
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.775
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.775
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.775
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.775
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.775
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.775
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.775
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.775
CPEB2 Bos taurus ENSBTAG00000019847 I 0.775
CPEB4 Sorex araneus ENSSARG00000013389 I 0.775
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.775
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.775
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.775
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.775
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.775
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.775
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.775
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.775
CPEB2 Gallus gallus ENSGALG00000014516 I 0.775
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.775
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.775
CPEB2 Homo sapiens ENSG00000137449 D 0.775
CPEB2 Equus caballus ENSECAG00000008722 I 0.775
GH16131 Drosophila grimshawi FBgn0123602 I 0.774
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.774
ISCW010113 Ixodes scapularis ISCW010113 I 0.771
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.770
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.770
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.768
GE21274 Drosophila yakuba FBgn0238542 I 0.768
GJ12289 Drosophila virilis FBgn0199538 I 0.768
orb2 Drosophila melanogaster FBgn0262573 D 0.768
GF10140 Drosophila ananassae FBgn0087181 I 0.768
GK17460 Drosophila willistoni FBgn0219459 I 0.768
GG15051 Drosophila erecta FBgn0107305 I 0.768
GI12400 Drosophila mojavensis FBgn0135157 I 0.768
GL20808 Drosophila persimilis FBgn0158403 I 0.768
PHUM335520 Pediculus humanus PHUM335520 I 0.766
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.756
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.755
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.754
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.750
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.748
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.748
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.748
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.748
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.745
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.743
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.743
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.732
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.725
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.725
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.719
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.717
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.710
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.707
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.707