AAA50004 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA50004 T59423_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.843
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.843
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA50004 RRM 23 92
AAA50004 RRM 112 181

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49919 Xenopus laevis AAA49919 I 0.821
AAA49920 Xenopus laevis AAA49920 I 0.829
AAH82667 Xenopus laevis AAH82667 I 0.829
AAH84959 Xenopus laevis AAH84959 I 0.821
AAI69841 Xenopus laevis AAI69841 I 1.000
AGAP006656 Anopheles gambiae AGAP006656 N 0.743
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.771
CBF67566 Xenopus laevis CBF67566 I 0.829
CBG03639 Caenorhabditis briggsae CBG03639 I 0.729
CBN10423 Caenorhabditis brenneri CBN10423 I 0.736
CBU92439 Xenopus laevis CBU92439 I 0.829
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.843
MSI2 Bos taurus ENSBTAG00000004406 N 0.807
MSI1 Canis familiaris ENSCAFG00000010283 I 0.824
MSI2 Canis familiaris ENSCAFG00000017418 I 0.929
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.843
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.900
MSI2 Cavia porcellus ENSCPOG00000008752 N 0.707
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.843
msi1 Danio rerio ENSDARG00000010710 I 0.786
msi2b Danio rerio ENSDARG00000032614 I 0.971
msi2a Danio rerio ENSDARG00000033901 I 0.943
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.821
LOC100070744 Equus caballus ENSECAG00000011435 I 0.779
LOC100053469 Equus caballus ENSECAG00000017526 I 0.743
MSI1 Echinops telfairi ENSETEG00000004756 I 0.764
MSI1 Felis catus ENSFCAG00000011007 I 0.771
MSI1 Homo sapiens ENSG00000135097 D 0.843
MSI2 Homo sapiens ENSG00000153944 I 0.971
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.836
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.714
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.971
MSI2 Microcebus murinus ENSMICG00000013598 I 0.971
MSI2 Macaca mulatta ENSMMUG00000002069 I 0.804
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.771
Msi1 Mus musculus ENSMUSG00000054256 I 0.836
Msi2 Mus musculus ENSMUSG00000069769 I 0.971
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.971
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.779
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.821
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.743
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.971
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.757
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.879
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.764
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.843
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.836
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.821
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.836
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.836
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.829
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.836
GF24401 Drosophila ananassae FBgn0101395 I 0.800
GG15829 Drosophila erecta FBgn0108068 I 0.800
GH15068 Drosophila grimshawi FBgn0122543 I 0.800
GI12835 Drosophila mojavensis FBgn0135592 I 0.800
GM24349 Drosophila sechellia FBgn0179213 I 0.800
GD12423 Drosophila simulans FBgn0184155 I 0.800
GK18043 Drosophila willistoni FBgn0220042 I 0.800
GE22169 Drosophila yakuba FBgn0239397 I 0.800
Rbp6 Drosophila melanogaster FBgn0260943 I 0.800
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.800
Minc01924 Meloidogyne incognita Minc01924 I 0.736
nasonia_NCBI_hmm598804 Nasonia vitripennis nasonia_NCBI_hmm598804 N 0.743
msi-1 Caenorhabditis elegans R10E9.1 I 0.743