ZFN3 (Arabidopsis thaliana)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 AT5G16540-TAIR-G T01914_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G16540.1-P CCCH ZF 44 69
AT5G16540.1-P CCCH ZF 89 114
AT5G16540.1-P CCCH ZF 134 160
AT5G16540.1-P CCCH ZF 244 270
AT5G16540.1-P CCCH ZF 290 316
AT5G16540.2-P CCCH ZF 44 69
AT5G16540.2-P CCCH ZF 89 114
AT5G16540.2-P CCCH ZF 134 160
AT5G16540.2-P CCCH ZF 244 270
AT5G16540.2-P CCCH ZF 283 309
AT5G16540.3-P CCCH ZF 23 48
AT5G16540.3-P CCCH ZF 68 93
AT5G16540.3-P CCCH ZF 113 139
AT5G16540.3-P CCCH ZF 223 249
AT5G16540.3-P CCCH ZF 269 295

Links

Other CCCH ZF family RBPs
Other Arabidopsis thaliana RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK23881.1 Cannabis sativa PK23881.1 N 0.851
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.701
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.866
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.858
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.851
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.858
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.739
mgf007299m Mimulus guttatus mgf007299m N 0.830
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.776
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.805
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.784
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.820
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.821
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.858
MDP0000178517 Malus x domestica MDP0000178517 N 0.797
MDP0000577111 Malus x domestica MDP0000577111 N 0.724
MDP0000665604 Malus x domestica MDP0000665604 N 0.724
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.858
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.844
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.925
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.731
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.797
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.784
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.827
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.850
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.925
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.970
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.785
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.842
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.835
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.784
SB05G013190 Sorghum bicolor Sb05g013190 N 0.820
30128.m009030 Ricinus communis 30128.m009030 N 0.858
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.844
ppa005813m Prunus persica ppa005813m N 0.866