MDP0000207283 (Malus x domestica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 MDP0000207283 T06330_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000207283 CCCH ZF 152 178
MDP0000207283 CCCH ZF 198 223
MDP0000207283 CCCH ZF 243 269
MDP0000207283 CCCH ZF 400 426
MDP0000207283 CCCH ZF 465 491

Links

Other CCCH ZF family RBPs
Other Malus x domestica RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK29685.1 Cannabis sativa PK29685.1 N 0.716
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.709
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.701
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.701
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.724
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.704
mgf001793m Mimulus guttatus mgf001793m N 0.754
mgf002685m Mimulus guttatus mgf002685m N 0.716
mgf004851m Mimulus guttatus mgf004851m N 0.754
mgf010716m Mimulus guttatus mgf010716m N 0.754
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.711
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.739
MDP0000319251 Malus x domestica MDP0000319251 N 0.754
MDP0000535412 Malus x domestica MDP0000535412 N 0.746
MDP0000808281 Malus x domestica MDP0000808281 N 0.859
ppa005056m Prunus persica ppa005056m N 0.746
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.896
Glyma10g02540.1 Glycine max Glyma10g02540.1 N 0.830
Glyma07g37980.1 Glycine max Glyma07g37980.1 N 0.724
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.852
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.704
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.858
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.731
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.701
SB03G009930 Sorghum bicolor Sb03g009930 N 0.704
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.852
29647.m002009 Ricinus communis 29647.m002009 N 0.881
29726.m004014 Ricinus communis 29726.m004014 N 0.754
30128.m009030 Ricinus communis 30128.m009030 N 0.709
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.709
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.746
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.866
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.741
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.888
ppa005229m Prunus persica ppa005229m N 0.955